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The map label for this gene is ccsA [H]

Identifier: 78189638

GI number: 78189638

Start: 2181561

End: 2182358

Strand: Reverse

Name: ccsA [H]

Synonym: Cag_1681

Alternate gene names: 78189638

Gene position: 2182358-2181561 (Counterclockwise)

Preceding gene: 78189639

Following gene: 78189637

Centisome position: 84.85

GC content: 47.37

Gene sequence:

>798_bases
ATGACTTCAAATTTTACGATAGCGGCTACCATTGCCATTGCATGTTGGGCAATTGGCATTCTTGCCCGTTTATTTTCTCG
CCGCATTCCTGCATTGCGCTTACCCGCTCAATTGTTCCCCCTTATAGGTTCTGCCGTTATGGTGGGCTTAATAAGTTGGT
ACTGGATTGCCCTTGAACGTCCACCACTTCGCACGCTTGGCGAAACACGCTTATGGTACGCCATGCTTATTCCTTTAGCA
GGCTCTTTAGTTGAGTATCGCTGGAAAATTGGATGGCTGAACTATTACTGTATGGCGCTTGCAACCTTTTTTCTTGCCAT
TAATTTGCTTCACCCCGAAGTGTTCGATAAAAGTTTAATGCCTGCGCTACAAAGCCCGTGGTTTGTGCCGCACGTTGTGG
TGTATCTTGTGGGCTATGTGCTGCTTGCCGCCGCCTCTGCAACCGCGCTCCATAACGTGGTGCTCCATTTGCAAGCAAAA
GAAAATCTTAACGGCACTATGGTTGCCCATTACCTTGCATTGCTGGGCTTTGTATTTCTCACCTTTGGATTGATTTTTGG
AGCGCTTTGGGCAAAAGAGGCGTGGGGGCACTATTGGACGTGGGATCCAAAAGAGACGTGGGCATTGCTTTCGTGGTTAG
CCTATCTTGGCTACTTGCACGCATGGCATTACAACATTGAGAGCCGTAAGTTGCAATGGTACTTGGCACTCTCTTTTGTC
GTCTTGCTTATTTGCTGGTTTGGGGTGAACTATTTGCCTTCGGCTCAAAATAGTGTTCACACTTATTCGCAAAGCTAA

Upstream 100 bases:

>100_bases
CGATCCTTGGCTACCCGTTGTTTATACAGGCTTTTTTATGATGATGGCAGCAAATCTGCTCTTTTTTTGGAACGGTATTA
AATCTCGAAACTAAGCCATT

Downstream 100 bases:

>100_bases
TGTTCGATGTAACCTCTTTTCGTTTCTGTCTCTACTCTGCATAAGGGAGAATAGAACTCATGTTACTTCGACATAAAATA
TTGTCATTGAATGGAACATT

Product: cytochrome c biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MTSNFTIAATIAIACWAIGILARLFSRRIPALRLPAQLFPLIGSAVMVGLISWYWIALERPPLRTLGETRLWYAMLIPLA
GSLVEYRWKIGWLNYYCMALATFFLAINLLHPEVFDKSLMPALQSPWFVPHVVVYLVGYVLLAAASATALHNVVLHLQAK
ENLNGTMVAHYLALLGFVFLTFGLIFGALWAKEAWGHYWTWDPKETWALLSWLAYLGYLHAWHYNIESRKLQWYLALSFV
VLLICWFGVNYLPSAQNSVHTYSQS

Sequences:

>Translated_265_residues
MTSNFTIAATIAIACWAIGILARLFSRRIPALRLPAQLFPLIGSAVMVGLISWYWIALERPPLRTLGETRLWYAMLIPLA
GSLVEYRWKIGWLNYYCMALATFFLAINLLHPEVFDKSLMPALQSPWFVPHVVVYLVGYVLLAAASATALHNVVLHLQAK
ENLNGTMVAHYLALLGFVFLTFGLIFGALWAKEAWGHYWTWDPKETWALLSWLAYLGYLHAWHYNIESRKLQWYLALSFV
VLLICWFGVNYLPSAQNSVHTYSQS
>Mature_264_residues
TSNFTIAATIAIACWAIGILARLFSRRIPALRLPAQLFPLIGSAVMVGLISWYWIALERPPLRTLGETRLWYAMLIPLAG
SLVEYRWKIGWLNYYCMALATFFLAINLLHPEVFDKSLMPALQSPWFVPHVVVYLVGYVLLAAASATALHNVVLHLQAKE
NLNGTMVAHYLALLGFVFLTFGLIFGALWAKEAWGHYWTWDPKETWALLSWLAYLGYLHAWHYNIESRKLQWYLALSFVV
LLICWFGVNYLPSAQNSVHTYSQS

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 30255; Mature: 30124

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSNFTIAATIAIACWAIGILARLFSRRIPALRLPAQLFPLIGSAVMVGLISWYWIALER
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
PPLRTLGETRLWYAMLIPLAGSLVEYRWKIGWLNYYCMALATFFLAINLLHPEVFDKSLM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
PALQSPWFVPHVVVYLVGYVLLAAASATALHNVVLHLQAKENLNGTMVAHYLALLGFVFL
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHH
TFGLIFGALWAKEAWGHYWTWDPKETWALLSWLAYLGYLHAWHYNIESRKLQWYLALSFV
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
VLLICWFGVNYLPSAQNSVHTYSQS
HHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TSNFTIAATIAIACWAIGILARLFSRRIPALRLPAQLFPLIGSAVMVGLISWYWIALER
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
PPLRTLGETRLWYAMLIPLAGSLVEYRWKIGWLNYYCMALATFFLAINLLHPEVFDKSLM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
PALQSPWFVPHVVVYLVGYVLLAAASATALHNVVLHLQAKENLNGTMVAHYLALLGFVFL
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHH
TFGLIFGALWAKEAWGHYWTWDPKETWALLSWLAYLGYLHAWHYNIESRKLQWYLALSFV
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
VLLICWFGVNYLPSAQNSVHTYSQS
HHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA