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The map label for this gene is asnC [C]

Identifier: 78189549

GI number: 78189549

Start: 2075936

End: 2076460

Strand: Reverse

Name: asnC [C]

Synonym: Cag_1589

Alternate gene names: 78189549

Gene position: 2076460-2075936 (Counterclockwise)

Preceding gene: 78189555

Following gene: 78189548

Centisome position: 80.73

GC content: 40.57

Gene sequence:

>525_bases
ATGTCGTGCCATTTAGATGTTATTGATCTGAAAATTATTGAATCGCTTGGTGAAAATGGGCGCATTCGTCTTAGTGAGTT
AGCTGAAGTGGTAGGTCTTTCCATTCCATCGGTAAGCGAGCGTCTCGATAAGCTCCAAAAAGGTGGTATTATTAAAGGCT
TTACTTTGGAGGTTGACGAACGCCAGCTTGGTTTTGATATTCATGCCTTTGTGCGTGTTAGAATTGATTCATCAAAGCAC
TATAAATCCTTTATGGAGCATGTGCTCAAAGAAGATGAAATTATGGAGTGCTTTTCGGTAACAGGCGAAGGCTCCCATAT
TCTTAAAGTGATGACGCACAATACGGCATCGCTTGAGCAATTTCTTTCGCGTATCCAAAGTTGGCCAGGAGTTCTTGGCA
CCAATACCAGTTTTGTGTTATCGCAAATAAAAAAGAATCGTAAAATTTGCTCCGATATTGTTCGTCGCAATCTTCAAGAT
CGGCAAGTGCTTACTACCTTTGATGAAAAAAAGTCGAAGAGATAG

Upstream 100 bases:

>100_bases
AGTTACTAAATATTAAAGATGACGATTGTTTTTTTCTTACTATTATGTAATTTCTGTTCTTTTTTAAACGCTCTGTAACA
ACTCTCCTGATAACGTGCGT

Downstream 100 bases:

>100_bases
CCAAGCTCAACCGTTACAACGCAATGTATCTCAATAGAGAACAGATATAGCTTATTACATTTACAATTCACTACTTAACA
AGGAGGATGTTTTGAACAGC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MSCHLDVIDLKIIESLGENGRIRLSELAEVVGLSIPSVSERLDKLQKGGIIKGFTLEVDERQLGFDIHAFVRVRIDSSKH
YKSFMEHVLKEDEIMECFSVTGEGSHILKVMTHNTASLEQFLSRIQSWPGVLGTNTSFVLSQIKKNRKICSDIVRRNLQD
RQVLTTFDEKKSKR

Sequences:

>Translated_174_residues
MSCHLDVIDLKIIESLGENGRIRLSELAEVVGLSIPSVSERLDKLQKGGIIKGFTLEVDERQLGFDIHAFVRVRIDSSKH
YKSFMEHVLKEDEIMECFSVTGEGSHILKVMTHNTASLEQFLSRIQSWPGVLGTNTSFVLSQIKKNRKICSDIVRRNLQD
RQVLTTFDEKKSKR
>Mature_173_residues
SCHLDVIDLKIIESLGENGRIRLSELAEVVGLSIPSVSERLDKLQKGGIIKGFTLEVDERQLGFDIHAFVRVRIDSSKHY
KSFMEHVLKEDEIMECFSVTGEGSHILKVMTHNTASLEQFLSRIQSWPGVLGTNTSFVLSQIKKNRKICSDIVRRNLQDR
QVLTTFDEKKSKR

Specific function: Activator Of Asna Transcription; Autogenous Regulator Of Its Own Transcription; And Repressor Of The Expression Of Gida At A Post-Transcriptional Level. [C]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=137, Percent_Identity=32.8467153284672, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI1787116, Length=148, Percent_Identity=29.7297297297297, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI87081742, Length=143, Percent_Identity=29.3706293706294, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR001845
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 19830; Mature: 19699

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCHLDVIDLKIIESLGENGRIRLSELAEVVGLSIPSVSERLDKLQKGGIIKGFTLEVDE
CCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEEECC
RQLGFDIHAFVRVRIDSSKHYKSFMEHVLKEDEIMECFSVTGEGSHILKVMTHNTASLEQ
HHHCCEEEEEEEEEECCCHHHHHHHHHHHCHHHHHHHHHCCCCCCEEEEEECCCHHHHHH
FLSRIQSWPGVLGTNTSFVLSQIKKNRKICSDIVRRNLQDRQVLTTFDEKKSKR
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
SCHLDVIDLKIIESLGENGRIRLSELAEVVGLSIPSVSERLDKLQKGGIIKGFTLEVDE
CCCCHHHHHHHHHHCCCCCCEEHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEEECC
RQLGFDIHAFVRVRIDSSKHYKSFMEHVLKEDEIMECFSVTGEGSHILKVMTHNTASLEQ
HHHCCEEEEEEEEEECCCHHHHHHHHHHHCHHHHHHHHHCCCCCCEEEEEECCCHHHHHH
FLSRIQSWPGVLGTNTSFVLSQIKKNRKICSDIVRRNLQDRQVLTTFDEKKSKR
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]