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The map label for this gene is rbfA

Identifier: 78189422

GI number: 78189422

Start: 1926296

End: 1926667

Strand: Reverse

Name: rbfA

Synonym: Cag_1461

Alternate gene names: 78189422

Gene position: 1926667-1926296 (Counterclockwise)

Preceding gene: 78189423

Following gene: 78189421

Centisome position: 74.91

GC content: 46.24

Gene sequence:

>372_bases
ATGTCACGAAGAACGGAACGCGTTGCCTCCTTGTTGCAGCATGAATTAGGGGCAATTTTTCAACTTGAGCTGCCCCGCAC
GCCCATTGTTACCATTGTGGAGGTAAAGGTTACGGTGGATTTAGGTATTGCACGCGTTTACATCTCCACAATTGGAACAC
CTGAAGAGCAAGCGGCTATTATGGCGCATTTGCAAGAGCAGAATAAATACATTCGCAAATTGCTTTCGCAACGCATTCGC
CATCAATTTCGTCGTATTCCTGAGCTGGAGTTTTATGAAGATCACCTTTACGAACATGCTCGCCATATTGAGCAGCTTTT
AAGCCAAGTTCGTAAAGCGCCCGTTGATGATGCTGAAACGCCGCTTGACTAA

Upstream 100 bases:

>100_bases
TTAAAGAACTACGACGATATTAAAGTTGGTGATGTTGTTGAAGCGTACCGCATTGTTGAGAAAAAACGCAAACTCTAACT
TCACCTTTTAATAAAGCGCA

Downstream 100 bases:

>100_bases
TGCTTGTTGTTACTGTTTCAGAGTTATCACTTCCCTTTTCCTTTATTAAAAAAGTAAGGGGGAACTGTTATGTGTAACGT
TCACGCACAACAGGGGAGTG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MSRRTERVASLLQHELGAIFQLELPRTPIVTIVEVKVTVDLGIARVYISTIGTPEEQAAIMAHLQEQNKYIRKLLSQRIR
HQFRRIPELEFYEDHLYEHARHIEQLLSQVRKAPVDDAETPLD

Sequences:

>Translated_123_residues
MSRRTERVASLLQHELGAIFQLELPRTPIVTIVEVKVTVDLGIARVYISTIGTPEEQAAIMAHLQEQNKYIRKLLSQRIR
HQFRRIPELEFYEDHLYEHARHIEQLLSQVRKAPVDDAETPLD
>Mature_122_residues
SRRTERVASLLQHELGAIFQLELPRTPIVTIVEVKVTVDLGIARVYISTIGTPEEQAAIMAHLQEQNKYIRKLLSQRIRH
QFRRIPELEFYEDHLYEHARHIEQLLSQVRKAPVDDAETPLD

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_CHLCH (Q3AQK8)

Other databases:

- EMBL:   CP000108
- RefSeq:   YP_379760.1
- ProteinModelPortal:   Q3AQK8
- SMR:   Q3AQK8
- STRING:   Q3AQK8
- GeneID:   3746430
- GenomeReviews:   CP000108_GR
- KEGG:   cch:Cag_1461
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   RRTEKVA
- ProtClustDB:   CLSK637234
- BioCyc:   CCHL340177:CAG_1461-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14364; Mature: 14233

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRRTERVASLLQHELGAIFQLELPRTPIVTIVEVKVTVDLGIARVYISTIGTPEEQAAI
CCHHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEEEHHHHHHHHHHHHHCCCCHHHHHH
MAHLQEQNKYIRKLLSQRIRHQFRRIPELEFYEDHLYEHARHIEQLLSQVRKAPVDDAET
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PLD
CCC
>Mature Secondary Structure 
SRRTERVASLLQHELGAIFQLELPRTPIVTIVEVKVTVDLGIARVYISTIGTPEEQAAI
CHHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEEEHHHHHHHHHHHHHCCCCHHHHHH
MAHLQEQNKYIRKLLSQRIRHQFRRIPELEFYEDHLYEHARHIEQLLSQVRKAPVDDAET
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PLD
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA