Click here to switch to the map view.

The map label for this gene is yloC [H]

Identifier: 78189418

GI number: 78189418

Start: 1923145

End: 1924032

Strand: Reverse

Name: yloC [H]

Synonym: Cag_1457

Alternate gene names: 78189418

Gene position: 1924032-1923145 (Counterclockwise)

Preceding gene: 162319772

Following gene: 78189417

Centisome position: 74.8

GC content: 44.82

Gene sequence:

>888_bases
ATGCTGGAAAGCATGACCGGATATGGCAGTGCTGAGTCGGTAATGGATGGGGTTCGTGCCTTAGTTGAACTTCGTTCCGT
TAATAACCGTTTTGCTGAAATTAGCGTTAAACTGCCTCGTCAGTTGCTTGCCTATGAGCTTGAAGTGCGCGAAATGATTC
GCGCTCATTTTCAGCGTGGCAAAATTTCAGCCTTTATTCAATTACAACTTGATGAAGAGCAGCCCATTCCCGTAGCCATT
AATCCTGCAAAAGTTAAAGCATACACTGCCTTATTGCGCTCCCTGCAACAAGAGGCGGAAATTGATGCGCCGCTTCAGCT
CGACCATCTTTTGCGCTTTTCGGAAATTTTTGATAGCACTGCCTCAGCGCTTGATAAAGGCGAAATGCTTTGGCCCTCTG
TAAAAACCTTAGTGCTTGAAGCTATTGAGCGCTTGCAAGCTATGCGGCGTCGCGAAGGCGAAGAGCTTTCGGGCGATTTT
CGCCAGCGCATTGCAACTATTGAAGAGTTGCTTGCAACCATTACCACTTTGGCAGCAGGTAATCTTGATGCCGTTCGAGC
AAAACTTACCGCTCGCGTTGAAGCCGTTGCAGGTAAAGATGTTGCCTACAGCCGCGATAGGCTTGAAATGGAGTTAGTAA
TTGCTGCCGATAAGCTTGATATTACCGAAGAGCTTACTCGTTTTGCAAGCCATAACAAGTTTTTTATACAAGAACTTGAA
AGCAATGAAAGTGGAGCTGGTCGCAAGCTGAATTTTTTATTGCAAGAACAATTGCGCGAAGCCAACACCATAGCATCAAA
ATCGCAAAATGCGGCTATTTCGCAACATGTTGTACACATTAAAGAAGAGCTTGAAAAAATTCGTGAACAACTCCAAAACA
TAGAATAA

Upstream 100 bases:

>100_bases
CGAACTTGAACTTCGCAAGTAAGCTTCACCGTACAATTTTTCCCCCCTTAGCTGCCGGCTCCATAGCCGGCATGCTACGT
TTAAAACAGGAGATGCAAGA

Downstream 100 bases:

>100_bases
GCGTTATGGCAGTTGAACCTTCAGGCAAACTTATTGTGTTTTCAGCTCCATCGGGGGCAGGCAAAACTACCATTGCAACT
ATGGTATTGCAACGCATTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MLESMTGYGSAESVMDGVRALVELRSVNNRFAEISVKLPRQLLAYELEVREMIRAHFQRGKISAFIQLQLDEEQPIPVAI
NPAKVKAYTALLRSLQQEAEIDAPLQLDHLLRFSEIFDSTASALDKGEMLWPSVKTLVLEAIERLQAMRRREGEELSGDF
RQRIATIEELLATITTLAAGNLDAVRAKLTARVEAVAGKDVAYSRDRLEMELVIAADKLDITEELTRFASHNKFFIQELE
SNESGAGRKLNFLLQEQLREANTIASKSQNAAISQHVVHIKEELEKIREQLQNIE

Sequences:

>Translated_295_residues
MLESMTGYGSAESVMDGVRALVELRSVNNRFAEISVKLPRQLLAYELEVREMIRAHFQRGKISAFIQLQLDEEQPIPVAI
NPAKVKAYTALLRSLQQEAEIDAPLQLDHLLRFSEIFDSTASALDKGEMLWPSVKTLVLEAIERLQAMRRREGEELSGDF
RQRIATIEELLATITTLAAGNLDAVRAKLTARVEAVAGKDVAYSRDRLEMELVIAADKLDITEELTRFASHNKFFIQELE
SNESGAGRKLNFLLQEQLREANTIASKSQNAAISQHVVHIKEELEKIREQLQNIE
>Mature_295_residues
MLESMTGYGSAESVMDGVRALVELRSVNNRFAEISVKLPRQLLAYELEVREMIRAHFQRGKISAFIQLQLDEEQPIPVAI
NPAKVKAYTALLRSLQQEAEIDAPLQLDHLLRFSEIFDSTASALDKGEMLWPSVKTLVLEAIERLQAMRRREGEELSGDF
RQRIATIEELLATITTLAAGNLDAVRAKLTARVEAVAGKDVAYSRDRLEMELVIAADKLDITEELTRFASHNKFFIQELE
SNESGAGRKLNFLLQEQLREANTIASKSQNAAISQHVVHIKEELEKIREQLQNIE

Specific function: Unknown

COG id: COG1561

COG function: function code S; Uncharacterized stress-induced protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0701 family [H]

Homologues:

Organism=Escherichia coli, GI1790075, Length=298, Percent_Identity=30.5369127516779, Blast_Score=112, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005229
- InterPro:   IPR013551
- InterPro:   IPR013527 [H]

Pfam domain/function: PF08340 DUF1732; PF03755 YicC_N [H]

EC number: NA

Molecular weight: Translated: 33283; Mature: 33283

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLESMTGYGSAESVMDGVRALVELRSVNNRFAEISVKLPRQLLAYELEVREMIRAHFQRG
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KISAFIQLQLDEEQPIPVAINPAKVKAYTALLRSLQQEAEIDAPLQLDHLLRFSEIFDST
CEEEEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
ASALDKGEMLWPSVKTLVLEAIERLQAMRRREGEELSGDFRQRIATIEELLATITTLAAG
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
NLDAVRAKLTARVEAVAGKDVAYSRDRLEMELVIAADKLDITEELTRFASHNKFFIQELE
CHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHCCCHHHHHHHH
SNESGAGRKLNFLLQEQLREANTIASKSQNAAISQHVVHIKEELEKIREQLQNIE
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLESMTGYGSAESVMDGVRALVELRSVNNRFAEISVKLPRQLLAYELEVREMIRAHFQRG
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KISAFIQLQLDEEQPIPVAINPAKVKAYTALLRSLQQEAEIDAPLQLDHLLRFSEIFDST
CEEEEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
ASALDKGEMLWPSVKTLVLEAIERLQAMRRREGEELSGDFRQRIATIEELLATITTLAAG
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
NLDAVRAKLTARVEAVAGKDVAYSRDRLEMELVIAADKLDITEELTRFASHNKFFIQELE
CHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHCCCHHHHHHHH
SNESGAGRKLNFLLQEQLREANTIASKSQNAAISQHVVHIKEELEKIREQLQNIE
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377 [H]