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The map label for this gene is 78189140

Identifier: 78189140

GI number: 78189140

Start: 1567407

End: 1567877

Strand: Reverse

Name: 78189140

Synonym: Cag_1173

Alternate gene names: NA

Gene position: 1567877-1567407 (Counterclockwise)

Preceding gene: 78189141

Following gene: 78189139

Centisome position: 60.96

GC content: 40.98

Gene sequence:

>471_bases
ATGAGCCTTGAGCTATGCAATAGCACTCGCCAAGCTATTCCCAACAAACGCTTACTACAAGCCATTCGCATGGTTGTGCA
AGGCGAAGGTTACGAAATTGCTACAATTACGGGCGTTTATTGCGGCAACCGCATGAGCCAACGCATTAATCGCGACTATC
TCAATCACGATTATCCTACCGATACCATTACCTTTTGCTATAGTGAAGGCAAAGCTATTGAGGGGGAATTTTACATTTCA
CTTGATGTTATTCGCTGTAATGCACGCCATTTTAACGTAACGTTTGAAGAAGAACTGCTACGAGTTACTATCCATTCTGC
TCTGCACCTTACTGGCATGAACGACTATTTACCCGAAGAGCGAGTAGCTATGCAAGCTAAAGAAGATTATTATCTTCAGT
TGCTTAAAACTCAAAAAAGCATTTCACCCCAAAAAAGTACTGATAACGCTATTTTTTCTTGCAATTCATAA

Upstream 100 bases:

>100_bases
AAAAAGCATGAGGATGAAATGGTGGAATTAACCATTCATGTGCGGAACCATCAATTGCCTCAGATTGATGCTATGATTCA
AGCGGCAGCAGAGGCGCCCC

Downstream 100 bases:

>100_bases
ATCAACAGAAATACTATGAATCTTATTGTAAACGATATTGCTTGTACCGCAACGGTTGGACAAACTCTTGGCAGTGCCGC
TTGGAAAAACCATAGCCATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MSLELCNSTRQAIPNKRLLQAIRMVVQGEGYEIATITGVYCGNRMSQRINRDYLNHDYPTDTITFCYSEGKAIEGEFYIS
LDVIRCNARHFNVTFEEELLRVTIHSALHLTGMNDYLPEERVAMQAKEDYYLQLLKTQKSISPQKSTDNAIFSCNS

Sequences:

>Translated_156_residues
MSLELCNSTRQAIPNKRLLQAIRMVVQGEGYEIATITGVYCGNRMSQRINRDYLNHDYPTDTITFCYSEGKAIEGEFYIS
LDVIRCNARHFNVTFEEELLRVTIHSALHLTGMNDYLPEERVAMQAKEDYYLQLLKTQKSISPQKSTDNAIFSCNS
>Mature_155_residues
SLELCNSTRQAIPNKRLLQAIRMVVQGEGYEIATITGVYCGNRMSQRINRDYLNHDYPTDTITFCYSEGKAIEGEFYISL
DVIRCNARHFNVTFEEELLRVTIHSALHLTGMNDYLPEERVAMQAKEDYYLQLLKTQKSISPQKSTDNAIFSCNS

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_CHLCH (Q3ARE0)

Other databases:

- EMBL:   CP000108
- RefSeq:   YP_379478.1
- ProteinModelPortal:   Q3ARE0
- SMR:   Q3ARE0
- STRING:   Q3ARE0
- GeneID:   3747929
- GenomeReviews:   CP000108_GR
- KEGG:   cch:Cag_1173
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   IDGEFYI
- ProtClustDB:   CLSK637735
- BioCyc:   CCHL340177:CAG_1173-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17929; Mature: 17797

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLELCNSTRQAIPNKRLLQAIRMVVQGEGYEIATITGVYCGNRMSQRINRDYLNHDYPT
CCCCCCCCHHHHCCCHHHHHHHHHHHCCCCEEEEEEEEEHHCCHHHHHHHHHHCCCCCCC
DTITFCYSEGKAIEGEFYISLDVIRCNARHFNVTFEEELLRVTIHSALHLTGMNDYLPEE
CEEEEEECCCCEECCEEEEEEEEEEECCEEEEEEHHHHHHHHHHHHHEEECCCCCCCCHH
RVAMQAKEDYYLQLLKTQKSISPQKSTDNAIFSCNS
HHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
>Mature Secondary Structure 
SLELCNSTRQAIPNKRLLQAIRMVVQGEGYEIATITGVYCGNRMSQRINRDYLNHDYPT
CCCCCCCHHHHCCCHHHHHHHHHHHCCCCEEEEEEEEEHHCCHHHHHHHHHHCCCCCCC
DTITFCYSEGKAIEGEFYISLDVIRCNARHFNVTFEEELLRVTIHSALHLTGMNDYLPEE
CEEEEEECCCCEECCEEEEEEEEEEECCEEEEEEHHHHHHHHHHHHHEEECCCCCCCCHH
RVAMQAKEDYYLQLLKTQKSISPQKSTDNAIFSCNS
HHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA