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The map label for this gene is xerD [H]

Identifier: 78189085

GI number: 78189085

Start: 1508225

End: 1509139

Strand: Reverse

Name: xerD [H]

Synonym: Cag_1118

Alternate gene names: 78189085

Gene position: 1509139-1508225 (Counterclockwise)

Preceding gene: 78189086

Following gene: 78189082

Centisome position: 58.67

GC content: 44.48

Gene sequence:

>915_bases
ATGTCCACACTGAGCAGTAGCTACCAAACCACACTCAACAGCTTTCTTAACTACCTTATTGTTGAGCGCAACTTTTCCGC
CAACACACGCTCATCCTATCATAACGATTTACACCGCTATCTGCTTTTTGTGCAAGAACAAGCTACACCTATAGCAGAAA
TTACGTCCAAAGTAATTGATAGATTTCTTGCTGAACTTGTGGCGCTTGGGCTTGAAACTACTTCAATGGCACGCAACATT
TCTACGATTCGTTCATTTCATAAATTTTTACACAATGAACGGCTCAGTAGCAACAATCCTGCCGAGCGACTTCATCTCCC
TAAAAAAGCGCACTATTTGCCAGCCGTTTTAAATCTCTCCGAAACGCTTGCTTTGCTTGAAGCGCCCTCGATTATGCAGC
CAGCGCCTACGTATGCTTTGCGCGATCGTGCTATGCTTGAGCTACTTTACGCCACAGGCGTGCGAGCCACCGAGCTTATT
TCTATTCAGCAAGAGCATCTTTATAGCGATGCGGGATTTATTCGGATTTTTGGGAAAGGTTCAAAAGAGCGTTTGGTGCC
AATTGGTGCGTCGGCTACTCTATGGGTGCAGCGCTATCAAAAAGAGTTGCGGGTGCAGTTGGTAAAAGCGCACTCGAATG
ATTTTCTTTTTTTAAATAGTCGAGGTGGAAAGCTTTCGCGGATGAGCCTTTTTGAGATGGTAAAAACCTACAGTGTTGTT
GCAGGCATTACCAAATCTATTAGTCCGCATACGTTGCGTCACACTTTTGCAACGCATCTCATTGAAGGTGGCGCCGATTT
ACGTGCGGTGCAGGAAATGCTTGGGCATAGTTCTATTGTTACCACACAAATCTACACGCACTTAGATCGTTCTTTTATTA
AAGAGGTGCATAAAACATTTCACCCAAGAGGATAG

Upstream 100 bases:

>100_bases
TTGCCGAACCTCATGCCCAGCACATGACGTTGCCGGGCGATCGTTATGGCTACGATGGCGGGTTTTGCCAATGCCTCCGT
AAACTGCAAGAATAAACCGT

Downstream 100 bases:

>100_bases
GGAAGGAGATATTACATTACTCCAACTACCGTCCCCACTCCATGCTTTCCATAAGCTGATGTTTTTTATCGTAATGCTCC
ATCTCAATTTTTAAGGCTGA

Product: tyrosine recombinase XerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MSTLSSSYQTTLNSFLNYLIVERNFSANTRSSYHNDLHRYLLFVQEQATPIAEITSKVIDRFLAELVALGLETTSMARNI
STIRSFHKFLHNERLSSNNPAERLHLPKKAHYLPAVLNLSETLALLEAPSIMQPAPTYALRDRAMLELLYATGVRATELI
SIQQEHLYSDAGFIRIFGKGSKERLVPIGASATLWVQRYQKELRVQLVKAHSNDFLFLNSRGGKLSRMSLFEMVKTYSVV
AGITKSISPHTLRHTFATHLIEGGADLRAVQEMLGHSSIVTTQIYTHLDRSFIKEVHKTFHPRG

Sequences:

>Translated_304_residues
MSTLSSSYQTTLNSFLNYLIVERNFSANTRSSYHNDLHRYLLFVQEQATPIAEITSKVIDRFLAELVALGLETTSMARNI
STIRSFHKFLHNERLSSNNPAERLHLPKKAHYLPAVLNLSETLALLEAPSIMQPAPTYALRDRAMLELLYATGVRATELI
SIQQEHLYSDAGFIRIFGKGSKERLVPIGASATLWVQRYQKELRVQLVKAHSNDFLFLNSRGGKLSRMSLFEMVKTYSVV
AGITKSISPHTLRHTFATHLIEGGADLRAVQEMLGHSSIVTTQIYTHLDRSFIKEVHKTFHPRG
>Mature_303_residues
STLSSSYQTTLNSFLNYLIVERNFSANTRSSYHNDLHRYLLFVQEQATPIAEITSKVIDRFLAELVALGLETTSMARNIS
TIRSFHKFLHNERLSSNNPAERLHLPKKAHYLPAVLNLSETLALLEAPSIMQPAPTYALRDRAMLELLYATGVRATELIS
IQQEHLYSDAGFIRIFGKGSKERLVPIGASATLWVQRYQKELRVQLVKAHSNDFLFLNSRGGKLSRMSLFEMVKTYSVVA
GITKSISPHTLRHTFATHLIEGGADLRAVQEMLGHSSIVTTQIYTHLDRSFIKEVHKTFHPRG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=294, Percent_Identity=39.1156462585034, Blast_Score=221, Evalue=3e-59,
Organism=Escherichia coli, GI1790244, Length=297, Percent_Identity=35.016835016835, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI1790768, Length=163, Percent_Identity=31.2883435582822, Blast_Score=75, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34396; Mature: 34265

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLSSSYQTTLNSFLNYLIVERNFSANTRSSYHNDLHRYLLFVQEQATPIAEITSKVID
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
RFLAELVALGLETTSMARNISTIRSFHKFLHNERLSSNNPAERLHLPKKAHYLPAVLNLS
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHH
ETLALLEAPSIMQPAPTYALRDRAMLELLYATGVRATELISIQQEHLYSDAGFIRIFGKG
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECC
SKERLVPIGASATLWVQRYQKELRVQLVKAHSNDFLFLNSRGGKLSRMSLFEMVKTYSVV
CCCCEEECCCHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCHHHHHHHHHHHHHHHH
AGITKSISPHTLRHTFATHLIEGGADLRAVQEMLGHSSIVTTQIYTHLDRSFIKEVHKTF
HHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
HPRG
CCCC
>Mature Secondary Structure 
STLSSSYQTTLNSFLNYLIVERNFSANTRSSYHNDLHRYLLFVQEQATPIAEITSKVID
CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
RFLAELVALGLETTSMARNISTIRSFHKFLHNERLSSNNPAERLHLPKKAHYLPAVLNLS
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHH
ETLALLEAPSIMQPAPTYALRDRAMLELLYATGVRATELISIQQEHLYSDAGFIRIFGKG
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECC
SKERLVPIGASATLWVQRYQKELRVQLVKAHSNDFLFLNSRGGKLSRMSLFEMVKTYSVV
CCCCEEECCCHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCHHHHHHHHHHHHHHHH
AGITKSISPHTLRHTFATHLIEGGADLRAVQEMLGHSSIVTTQIYTHLDRSFIKEVHKTF
HHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
HPRG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]