Click here to switch to the map view.

The map label for this gene is spsC [H]

Identifier: 78189081

GI number: 78189081

Start: 1502746

End: 1503903

Strand: Reverse

Name: spsC [H]

Synonym: Cag_1114

Alternate gene names: 78189081

Gene position: 1503903-1502746 (Counterclockwise)

Preceding gene: 78189082

Following gene: 78189076

Centisome position: 58.47

GC content: 46.46

Gene sequence:

>1158_bases
ATGGCAGGAGCAGAACTTATTGGTAAAGAGGAGCTGGCTGAAATTCAGGAGCTTTTTAGCAAGGAAAAAGTTAATCTTTA
CCGTTATGGTGGAGGAAATTACAAAGCACGAGAATTTGAAGAGAAGTTTGCGGCATGGATGGGTGTGAAATATGCTCATG
CCGTGTCGTCAGGCACAGCAGCAATCCATTGCGCACTTGCGGGCGCTGGCATTCAACCTGGTGATGAAGTTATTACAACA
GCATGGACTTTTATTGCGCCTGTAGAAGCAATCAGTGCGCTTGGAGCAACGCCCGTTCCCGTTGAAATAGACGAAACCTA
TCACCTCGATCCACTCGAAGTAGAAAAAGCTATTACCCCAAAAACCAAAGCGGTGGTTGCTATCCCCATGTGGGCACCAC
CCAAAATGGATGAGTTAGTTGCCCTTTGCAATAAACATGGCTTAATTTTAATTGAAGATGCCGCTCAAGCGCTTGGTGCC
TCGTACAAGGGGCGCAAACTTGGCACCTTTGGTAAGGTAGCCTCCTTCTCGTTTGATGCGGGTAAAACCCTCCATACGGG
CGAAGGTGGCATTATTGTTACCAACGATAAGGAGGTTTACGACCGTGCAGCCGAATTTTCTGACCACGGGCACATGCACT
TACCGGGCTTACCACGCGGCAAAGATCCTCGTCGTGCAAAAGGTTTAAATCTCCGTTTAAGCGAAGTTACCGCAGCCATT
GGACTTGCGCAGCTTGCTAAAATTGAGATGATTCTTTCTCAAGCAAAAGAGAACAAGAAAAAGATTAAAGATGCTATTCG
TCATCTTGATAACATTGTTTTGCGTCCATTTAGCGATGAAGCAGGCGCTCAAGGCGATACGCTGATTTTCCGTGTACGCA
ATCGTGAAGCGGCGTTGCAGTTTGAAGCGCACTTGATGGAGCACGGTTTTGGCACCAAAATTCTACCCGAAGCGCTTGAT
TGGCATTTTGCGGGTGTTTGGAACCATTTGCTACCAGAGTATGAGCGTTATCAAAACGTTGATTTGGAAACGTTGTGGAC
TAACACAGGTACCATGCTTCGCAGCAGTATTTGCCTCAATATTCCCGTCTTAATGGATGATGATACCATTAAACGCCTCA
TTAACGCAATTGTAACGGGCGCTGAAAAGATTGGATAG

Upstream 100 bases:

>100_bases
GGAGTTAAAAAGTGCAGGGAGTTGTCATTGTGCTGTGCAAAAGCATAATGCATTATTAAAAAAGATTTTAACAAACAATC
AAAACAAACAAACCGAACCT

Downstream 100 bases:

>100_bases
GTTATAGGAATCGTTTTTTGTAGGGGCGAAAAAATTTTTCACCCCTACAAAGCTACCAAACGTAAACCCATTTTGTTTTA
TTTGTAGCAAGTTCCGAGAG

Product: DegT/DnrJ/EryC1/StrS family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 384

Protein sequence:

>385_residues
MAGAELIGKEELAEIQELFSKEKVNLYRYGGGNYKAREFEEKFAAWMGVKYAHAVSSGTAAIHCALAGAGIQPGDEVITT
AWTFIAPVEAISALGATPVPVEIDETYHLDPLEVEKAITPKTKAVVAIPMWAPPKMDELVALCNKHGLILIEDAAQALGA
SYKGRKLGTFGKVASFSFDAGKTLHTGEGGIIVTNDKEVYDRAAEFSDHGHMHLPGLPRGKDPRRAKGLNLRLSEVTAAI
GLAQLAKIEMILSQAKENKKKIKDAIRHLDNIVLRPFSDEAGAQGDTLIFRVRNREAALQFEAHLMEHGFGTKILPEALD
WHFAGVWNHLLPEYERYQNVDLETLWTNTGTMLRSSICLNIPVLMDDDTIKRLINAIVTGAEKIG

Sequences:

>Translated_385_residues
MAGAELIGKEELAEIQELFSKEKVNLYRYGGGNYKAREFEEKFAAWMGVKYAHAVSSGTAAIHCALAGAGIQPGDEVITT
AWTFIAPVEAISALGATPVPVEIDETYHLDPLEVEKAITPKTKAVVAIPMWAPPKMDELVALCNKHGLILIEDAAQALGA
SYKGRKLGTFGKVASFSFDAGKTLHTGEGGIIVTNDKEVYDRAAEFSDHGHMHLPGLPRGKDPRRAKGLNLRLSEVTAAI
GLAQLAKIEMILSQAKENKKKIKDAIRHLDNIVLRPFSDEAGAQGDTLIFRVRNREAALQFEAHLMEHGFGTKILPEALD
WHFAGVWNHLLPEYERYQNVDLETLWTNTGTMLRSSICLNIPVLMDDDTIKRLINAIVTGAEKIG
>Mature_384_residues
AGAELIGKEELAEIQELFSKEKVNLYRYGGGNYKAREFEEKFAAWMGVKYAHAVSSGTAAIHCALAGAGIQPGDEVITTA
WTFIAPVEAISALGATPVPVEIDETYHLDPLEVEKAITPKTKAVVAIPMWAPPKMDELVALCNKHGLILIEDAAQALGAS
YKGRKLGTFGKVASFSFDAGKTLHTGEGGIIVTNDKEVYDRAAEFSDHGHMHLPGLPRGKDPRRAKGLNLRLSEVTAAIG
LAQLAKIEMILSQAKENKKKIKDAIRHLDNIVLRPFSDEAGAQGDTLIFRVRNREAALQFEAHLMEHGFGTKILPEALDW
HFAGVWNHLLPEYERYQNVDLETLWTNTGTMLRSSICLNIPVLMDDDTIKRLINAIVTGAEKIG

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=259, Percent_Identity=35.9073359073359, Blast_Score=138, Evalue=6e-34,
Organism=Escherichia coli, GI2367285, Length=226, Percent_Identity=34.070796460177, Blast_Score=108, Evalue=7e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 42160; Mature: 42029

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGAELIGKEELAEIQELFSKEKVNLYRYGGGNYKAREFEEKFAAWMGVKYAHAVSSGTA
CCCCHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
AIHCALAGAGIQPGDEVITTAWTFIAPVEAISALGATPVPVEIDETYHLDPLEVEKAITP
EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHCCCC
KTKAVVAIPMWAPPKMDELVALCNKHGLILIEDAAQALGASYKGRKLGTFGKVASFSFDA
CCCEEEEEECCCCCCHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCCCCCCCHHEEECCC
GKTLHTGEGGIIVTNDKEVYDRAAEFSDHGHMHLPGLPRGKDPRRAKGLNLRLSEVTAAI
CCEEEECCCCEEEECCHHHHHHHHHHCCCCCEECCCCCCCCCCCHHCCCCEEHHHHHHHH
GLAQLAKIEMILSQAKENKKKIKDAIRHLDNIVLRPFSDEAGAQGDTLIFRVRNREAALQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEEECCCCHHHH
FEAHLMEHGFGTKILPEALDWHFAGVWNHLLPEYERYQNVDLETLWTNTGTMLRSSICLN
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCEEEECCCHHHHHHHHHEE
IPVLMDDDTIKRLINAIVTGAEKIG
CCEEECCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AGAELIGKEELAEIQELFSKEKVNLYRYGGGNYKAREFEEKFAAWMGVKYAHAVSSGTA
CCCHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
AIHCALAGAGIQPGDEVITTAWTFIAPVEAISALGATPVPVEIDETYHLDPLEVEKAITP
EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHCCCC
KTKAVVAIPMWAPPKMDELVALCNKHGLILIEDAAQALGASYKGRKLGTFGKVASFSFDA
CCCEEEEEECCCCCCHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCCCCCCCHHEEECCC
GKTLHTGEGGIIVTNDKEVYDRAAEFSDHGHMHLPGLPRGKDPRRAKGLNLRLSEVTAAI
CCEEEECCCCEEEECCHHHHHHHHHHCCCCCEECCCCCCCCCCCHHCCCCEEHHHHHHHH
GLAQLAKIEMILSQAKENKKKIKDAIRHLDNIVLRPFSDEAGAQGDTLIFRVRNREAALQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEEECCCCHHHH
FEAHLMEHGFGTKILPEALDWHFAGVWNHLLPEYERYQNVDLETLWTNTGTMLRSSICLN
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCEEEECCCHHHHHHHHHEE
IPVLMDDDTIKRLINAIVTGAEKIG
CCEEECCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]