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The map label for this gene is omp16 [H]

Identifier: 78189006

GI number: 78189006

Start: 1408290

End: 1408841

Strand: Reverse

Name: omp16 [H]

Synonym: Cag_1039

Alternate gene names: 78189006

Gene position: 1408841-1408290 (Counterclockwise)

Preceding gene: 78189019

Following gene: 78189001

Centisome position: 54.77

GC content: 48.19

Gene sequence:

>552_bases
ATGAAACGGTTATTGAGAAGCCTGTTTATTCCAGCCACGCTCTTGCTTGGAGCCTGCTGCATTGAAGATGATATTGTTGT
TGCCCCAGCCGCCGTGCCAGCTCCGGTTGCAGTACCAGCCCCAAAACCAACACCCGCACCCGCTGTAGTTGTGGTTCCAG
CCCCAGTTGCAGTTGTTGTTGTAGCGCCAGTGCCACCACCTCTTCCGAAGCCAATTGTTTTGCCAGCTCTTGTTGATGTC
TTCTTTGATTTCAATAAATCAGAACTTGGCACAACGAGGAATGAACAATTGAAGCGCAATGCTAACTGGATAAAGGCACA
TCCAACAAGCAATATTATCATTGAAGGGCATTGCGATGAGAGAGGCACCAATGAGTATAATATTGCACTGGGTGAGCGCC
GTGCAAATAGTGCAAAGGATTATATGGTTACGCTTGGGGTAGATCCTGCACGCCTAACAACGGTCAGTTATGGTGAGGAA
AAACCAGTTGCCATCGGTAGCACTGAGGAGGCATGGGCTCAGAACAGAAGGGTTCACTTTATTGCTGAATAA

Upstream 100 bases:

>100_bases
AAAACTCCTGAAAAATTATTTCTTTGTAAAATAAAGCATACCTTTACCTGATGGAGATTTATTTTGTTTGAATCAAAAAA
AATAATATTGGGAGGGAAAA

Downstream 100 bases:

>100_bases
GAAAAGCATTGCCCACAATGTATCCTTCGAGAATAAAAAAGCCCCGGAAACAATTCGGGGCTTTTTGCATTATCACACTT
CAGCAGTCTTACTTGCGGTT

Product: peptidoglycan-associated (lipo)protein-like protein

Products: NA

Alternate protein names: 16.5 kDa minor OMP; 16 kDa OMP; Minor outer membrane protein omp16 [H]

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MKRLLRSLFIPATLLLGACCIEDDIVVAPAAVPAPVAVPAPKPTPAPAVVVVPAPVAVVVVAPVPPPLPKPIVLPALVDV
FFDFNKSELGTTRNEQLKRNANWIKAHPTSNIIIEGHCDERGTNEYNIALGERRANSAKDYMVTLGVDPARLTTVSYGEE
KPVAIGSTEEAWAQNRRVHFIAE

Sequences:

>Translated_183_residues
MKRLLRSLFIPATLLLGACCIEDDIVVAPAAVPAPVAVPAPKPTPAPAVVVVPAPVAVVVVAPVPPPLPKPIVLPALVDV
FFDFNKSELGTTRNEQLKRNANWIKAHPTSNIIIEGHCDERGTNEYNIALGERRANSAKDYMVTLGVDPARLTTVSYGEE
KPVAIGSTEEAWAQNRRVHFIAE
>Mature_183_residues
MKRLLRSLFIPATLLLGACCIEDDIVVAPAAVPAPVAVPAPKPTPAPAVVVVPAPVAVVVVAPVPPPLPKPIVLPALVDV
FFDFNKSELGTTRNEQLKRNANWIKAHPTSNIIIEGHCDERGTNEYNIALGERRANSAKDYMVTLGVDPARLTTVSYGEE
KPVAIGSTEEAWAQNRRVHFIAE

Specific function: Thought To Play A Role In Bacterial Envelope Integrity. Very Strongly Associated With The Peptidoglycan. [C]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=98, Percent_Identity=44.8979591836735, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI48994946, Length=109, Percent_Identity=33.0275229357798, Blast_Score=60, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 19669; Mature: 19669

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLLRSLFIPATLLLGACCIEDDIVVAPAAVPAPVAVPAPKPTPAPAVVVVPAPVAVVV
CHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEECCCCCCCCCCEEEEECCCEEEEE
VAPVPPPLPKPIVLPALVDVFFDFNKSELGTTRNEQLKRNANWIKAHPTSNIIIEGHCDE
EECCCCCCCCCCHHHHHHHHHHCCCCHHCCCCCHHHHHCCCCEEEECCCCCEEEEECCCC
RGTNEYNIALGERRANSAKDYMVTLGVDPARLTTVSYGEEKPVAIGSTEEAWAQNRRVHF
CCCCEEEEEECCCCCCCCCCEEEEECCCCHHEEEEECCCCCCEEECCCHHHHHCCCEEEE
IAE
EEC
>Mature Secondary Structure
MKRLLRSLFIPATLLLGACCIEDDIVVAPAAVPAPVAVPAPKPTPAPAVVVVPAPVAVVV
CHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEECCCCCCCCCCEEEEECCCEEEEE
VAPVPPPLPKPIVLPALVDVFFDFNKSELGTTRNEQLKRNANWIKAHPTSNIIIEGHCDE
EECCCCCCCCCCHHHHHHHHHHCCCCHHCCCCCHHHHHCCCCEEEECCCCCEEEEECCCC
RGTNEYNIALGERRANSAKDYMVTLGVDPARLTTVSYGEEKPVAIGSTEEAWAQNRRVHF
CCCCEEEEEECCCCCCCCCCEEEEECCCCHHEEEEECCCCCCEEECCCHHHHHCCCEEEE
IAE
EEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8063379; 10456959 [H]