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The map label for this gene is yfdZ [H]

Identifier: 78188994

GI number: 78188994

Start: 1395188

End: 1396390

Strand: Reverse

Name: yfdZ [H]

Synonym: Cag_1027

Alternate gene names: 78188994

Gene position: 1396390-1395188 (Counterclockwise)

Preceding gene: 78189001

Following gene: 78188993

Centisome position: 54.29

GC content: 44.31

Gene sequence:

>1203_bases
ATGTTTGATGAAATAGAGTTTGATAAAATTAAGCGCTTACCAAAATATGTGTTTGCTGCGGTTAATGAGTTAAAAATGGC
TGAACGCCGTGCAGGCGAGGATATTATAGATTTTTCTATGGGCAATCCCGATGGTCCCACGCCTCAGCATATTGTTGATA
AGTTGGTTGAAAGCATCAATAAGCCACGCACGCATGGCTATTCAGTTTCTAAAGGAATTTATAAGCTGCGTGGTGCGGTT
GGCTCGTGGTATCAGCGCAAGTACAACGTTGATCTTGATCTTGATCGTGAGGTGGTGGCAACCATGGGCTCAAAAGAGGG
GTATGTGCATTTGGTGCAAGCAATTACCAATCCGGGCGATCTTGCTATGGTGCCCGATCCCTGCTATCCAATTCACTCGC
AAGCTTTTATTCTTGCTGGAGGCAATGTACATCGGCTGAAGCTTGATATGCATCCCGATTTTACGCTTGATGAAGAGGGC
TTTTTCCGCAACATTGAAACAGCATTGCGCGAATCTTCGCCTAAGCCGAAATATTTAGTGGTGAATTTTCCGAACAATCC
CACAACAGCAACCGTTGAACTGTCGTTTTATGAAAAGTTGGTAGCCTTAGCTCGTGAGGAGCGCTTTTACATTATTAGTG
ATATTGCTTATGCCGAAATCACTTTTGATGGCTATGTAACGCCCTCCATTCTTCAAGTGCCGGGCGCAAAAGATGTAGCC
GTTGAAAGCTATACGCTCTCAAAAACCTACAATATGGCAGGCTGGCGTGTAGGCTTTATGGTTGGTAATGCTAAGTTGAT
TGGGGCGTTAGAAAAAATTAAGAGTTGGCTTGATTATGGCACCTTTACCCCTATTCAAGTAGCCTCAACTATTGCCTTAA
TGGAAGATCAAAGCTGTGTGCGTGAAATTGCTGAGGTGTATCGCAAGCGGCGTGATGTTATGGTAAAGAGCTTTAATAAT
GCAGGATGGGATTTGGTGTCGCCCCGTGCAAGCATGTTTACATGGGCGCAAATTCCTGAGAAGTACCGCCATCTTGGCAG
CCTTGAGTTTAGTAAACGGTTATTAAAAGAGGCTAAAGTTGCTGTAAGCCCCGGTATTGGTTTTGGAGCGTATGGCGATG
AGTATGTTCGTATTGCAATGATTGAAAATGAAGAGCGTATTCGCCAAGCAGCGCGCAACATTAAGCGTTTTTTACGTGAG
TAA

Upstream 100 bases:

>100_bases
CGCTGCTTTTTTCTTATGATAAAGAAAGTTGTGCAGTTTAGTAGAAGCATCTACCATTAAGAGATGCTCTTTTTTTTCTA
ACCCGATAGTTGTTTAGATC

Downstream 100 bases:

>100_bases
TGTGATGCGCTGATTATTTGACATAACCCCCACAACGCCATTATACTTCAATGTGGTGTTGTGGGGGGTTACAATGGAGG
GTAACATCATGCTTTACCAC

Product: aspartate aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MFDEIEFDKIKRLPKYVFAAVNELKMAERRAGEDIIDFSMGNPDGPTPQHIVDKLVESINKPRTHGYSVSKGIYKLRGAV
GSWYQRKYNVDLDLDREVVATMGSKEGYVHLVQAITNPGDLAMVPDPCYPIHSQAFILAGGNVHRLKLDMHPDFTLDEEG
FFRNIETALRESSPKPKYLVVNFPNNPTTATVELSFYEKLVALAREERFYIISDIAYAEITFDGYVTPSILQVPGAKDVA
VESYTLSKTYNMAGWRVGFMVGNAKLIGALEKIKSWLDYGTFTPIQVASTIALMEDQSCVREIAEVYRKRRDVMVKSFNN
AGWDLVSPRASMFTWAQIPEKYRHLGSLEFSKRLLKEAKVAVSPGIGFGAYGDEYVRIAMIENEERIRQAARNIKRFLRE

Sequences:

>Translated_400_residues
MFDEIEFDKIKRLPKYVFAAVNELKMAERRAGEDIIDFSMGNPDGPTPQHIVDKLVESINKPRTHGYSVSKGIYKLRGAV
GSWYQRKYNVDLDLDREVVATMGSKEGYVHLVQAITNPGDLAMVPDPCYPIHSQAFILAGGNVHRLKLDMHPDFTLDEEG
FFRNIETALRESSPKPKYLVVNFPNNPTTATVELSFYEKLVALAREERFYIISDIAYAEITFDGYVTPSILQVPGAKDVA
VESYTLSKTYNMAGWRVGFMVGNAKLIGALEKIKSWLDYGTFTPIQVASTIALMEDQSCVREIAEVYRKRRDVMVKSFNN
AGWDLVSPRASMFTWAQIPEKYRHLGSLEFSKRLLKEAKVAVSPGIGFGAYGDEYVRIAMIENEERIRQAARNIKRFLRE
>Mature_400_residues
MFDEIEFDKIKRLPKYVFAAVNELKMAERRAGEDIIDFSMGNPDGPTPQHIVDKLVESINKPRTHGYSVSKGIYKLRGAV
GSWYQRKYNVDLDLDREVVATMGSKEGYVHLVQAITNPGDLAMVPDPCYPIHSQAFILAGGNVHRLKLDMHPDFTLDEEG
FFRNIETALRESSPKPKYLVVNFPNNPTTATVELSFYEKLVALAREERFYIISDIAYAEITFDGYVTPSILQVPGAKDVA
VESYTLSKTYNMAGWRVGFMVGNAKLIGALEKIKSWLDYGTFTPIQVASTIALMEDQSCVREIAEVYRKRRDVMVKSFNN
AGWDLVSPRASMFTWAQIPEKYRHLGSLEFSKRLLKEAKVAVSPGIGFGAYGDEYVRIAMIENEERIRQAARNIKRFLRE

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI95147551, Length=393, Percent_Identity=21.1195928753181, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI169881279, Length=393, Percent_Identity=21.1195928753181, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI56713256, Length=403, Percent_Identity=21.0918114143921, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI56713254, Length=403, Percent_Identity=21.0918114143921, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI169881281, Length=245, Percent_Identity=20.8163265306122, Blast_Score=72, Evalue=9e-13,
Organism=Escherichia coli, GI1788722, Length=396, Percent_Identity=56.8181818181818, Blast_Score=474, Evalue=1e-135,
Organism=Escherichia coli, GI1786816, Length=391, Percent_Identity=24.2966751918159, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1788627, Length=398, Percent_Identity=28.391959798995, Blast_Score=109, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI71994476, Length=403, Percent_Identity=23.8213399503722, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71994472, Length=403, Percent_Identity=23.8213399503722, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17567369, Length=397, Percent_Identity=21.4105793450882, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17567663, Length=380, Percent_Identity=23.1578947368421, Blast_Score=79, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6322401, Length=324, Percent_Identity=21.6049382716049, Blast_Score=78, Evalue=3e-15,
Organism=Drosophila melanogaster, GI28573069, Length=396, Percent_Identity=22.4747474747475, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24646114, Length=396, Percent_Identity=22.4747474747475, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI28573067, Length=396, Percent_Identity=22.4747474747475, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI28573065, Length=396, Percent_Identity=22.4747474747475, Blast_Score=100, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: 2.6.1.- [C]

Molecular weight: Translated: 45367; Mature: 45367

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDEIEFDKIKRLPKYVFAAVNELKMAERRAGEDIIDFSMGNPDGPTPQHIVDKLVESIN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHC
KPRTHGYSVSKGIYKLRGAVGSWYQRKYNVDLDLDREVVATMGSKEGYVHLVQAITNPGD
CCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCC
LAMVPDPCYPIHSQAFILAGGNVHRLKLDMHPDFTLDEEGFFRNIETALRESSPKPKYLV
EEECCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEE
VNFPNNPTTATVELSFYEKLVALAREERFYIISDIAYAEITFDGYVTPSILQVPGAKDVA
EECCCCCCEEEEEHHHHHHHHHHHHCCCEEEEECEEEEEEEECCCCCCHHEECCCCCCEE
VESYTLSKTYNMAGWRVGFMVGNAKLIGALEKIKSWLDYGTFTPIQVASTIALMEDQSCV
EEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHH
REIAEVYRKRRDVMVKSFNNAGWDLVSPRASMFTWAQIPEKYRHLGSLEFSKRLLKEAKV
HHHHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
AVSPGIGFGAYGDEYVRIAMIENEERIRQAARNIKRFLRE
EECCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFDEIEFDKIKRLPKYVFAAVNELKMAERRAGEDIIDFSMGNPDGPTPQHIVDKLVESIN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHC
KPRTHGYSVSKGIYKLRGAVGSWYQRKYNVDLDLDREVVATMGSKEGYVHLVQAITNPGD
CCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCC
LAMVPDPCYPIHSQAFILAGGNVHRLKLDMHPDFTLDEEGFFRNIETALRESSPKPKYLV
EEECCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEE
VNFPNNPTTATVELSFYEKLVALAREERFYIISDIAYAEITFDGYVTPSILQVPGAKDVA
EECCCCCCEEEEEHHHHHHHHHHHHCCCEEEEECEEEEEEEECCCCCCHHEECCCCCCEE
VESYTLSKTYNMAGWRVGFMVGNAKLIGALEKIKSWLDYGTFTPIQVASTIALMEDQSCV
EEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHH
REIAEVYRKRRDVMVKSFNNAGWDLVSPRASMFTWAQIPEKYRHLGSLEFSKRLLKEAKV
HHHHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
AVSPGIGFGAYGDEYVRIAMIENEERIRQAARNIKRFLRE
EECCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Pyridoxal Phosphate. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]