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The map label for this gene is 78188974

Identifier: 78188974

GI number: 78188974

Start: 1346002

End: 1346844

Strand: Reverse

Name: 78188974

Synonym: Cag_1007

Alternate gene names: NA

Gene position: 1346844-1346002 (Counterclockwise)

Preceding gene: 78188975

Following gene: 78188973

Centisome position: 52.36

GC content: 39.86

Gene sequence:

>843_bases
ATGAGTACTCTTAACCAAAAGATTGACTTTGCTATTATTATGCGTGTAACCAACGCAAACCCAAATGGTGATCCCCTTAA
TGGTAATCGTCCACGAACAGATCTTGATGGACACGGTGAGATGACAGATGTTTGCTTGAAACGAAAGATTCGTAATCGAA
TTATGGAATTAAAAGACAAGGAGCAAAAATATCAGTTTGATATTTTTGTTCAACCAGATGATAGTAAACGGGATAGCCAT
ACTTCGCTTAAAGCTCGTTTTGAAAGCGAAATAGGAAAAAATGTTAAGGACAAAGACGATGCTGCAAAAAAAGCTTGTAA
AAAATGGTTTGATGTTCGTGCCTTCGGTCAGCTTTTTGCATTTGACGGTGAAGAAAGTTCAGGTCTTTCCATTCCGGTTC
GAGGTCCCGTTAGTATTCACTCTGCATTTAGTGTAGAACCGGTTAATGTATCAAGTATTCAAATCACAAAAAGTGTTAGT
GGCAATGAAGGGAAAAATGGAAAACGATCTTCAGATACGATGGGAATGAAGCATCGTGTAGATTATGGAATTTATGTTAC
TTACGGCAGTATGAACCCTCAGCTTGCTGAACGCACAGGTTTCAGCGACGAAGATGCAAAAGTAATCATGGAAATTCTAC
CTAAGCTTTTTGAAAATGATGCTTCCTCTGCTCGCCCTGACGGTAGCATGGAAGTTGTTTCGGTTATCTGGTGGAAGCAT
GGGAGCAAAGCAGGCAAACATTCTTCAGCAAAAGTTCACAAATCTCTTCATGTGAATGAGGATGGTACGTACCGGTTGGA
CGATCTTGAAGGTTTAACGCCTGAGTGTATAAATGGTTTTTGA

Upstream 100 bases:

>100_bases
ACTGGTGAGTTTCTTCTTGGATATCACTGCCAAAGACTTAAGAATTATGAAGGAAGCTCGAAGAAAGACTAATTACTATA
ACTAACCCTATTGAAAAAAC

Downstream 100 bases:

>100_bases
GCATCAGATAAATGTAGTTCATGTATCCCGAATCCGACTTTATAGCAATCTCAGCCCTGCAACACTTTGCCTTTTGCCCT
CGGCAGTGTGCCCTTATCCA

Product: CRISPR-associated Csh2 family protein

Products: NA

Alternate protein names: CRISPR-Associated Csd2 Family Protein; CRISPR-Associated Csh2 Family Protein; Csd2 Family CRISPR-Associated Protein; CRISPR-Associated Protein; CRISPR-Associated Protein Csh2 Family; Crispr-Associated Protein; Cytoplasmic Protein; Crispr-Protein; CRISPR-Associated RAMP Csd3 Family Protein; CRISPR-Associated RAMP Protein Cmr1 Family; CRISPR-Associated Protein TM; Cas2 Family CRISPR-Associated Protein; CRISPR-Associated Protein Csd3 Family

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MSTLNQKIDFAIIMRVTNANPNGDPLNGNRPRTDLDGHGEMTDVCLKRKIRNRIMELKDKEQKYQFDIFVQPDDSKRDSH
TSLKARFESEIGKNVKDKDDAAKKACKKWFDVRAFGQLFAFDGEESSGLSIPVRGPVSIHSAFSVEPVNVSSIQITKSVS
GNEGKNGKRSSDTMGMKHRVDYGIYVTYGSMNPQLAERTGFSDEDAKVIMEILPKLFENDASSARPDGSMEVVSVIWWKH
GSKAGKHSSAKVHKSLHVNEDGTYRLDDLEGLTPECINGF

Sequences:

>Translated_280_residues
MSTLNQKIDFAIIMRVTNANPNGDPLNGNRPRTDLDGHGEMTDVCLKRKIRNRIMELKDKEQKYQFDIFVQPDDSKRDSH
TSLKARFESEIGKNVKDKDDAAKKACKKWFDVRAFGQLFAFDGEESSGLSIPVRGPVSIHSAFSVEPVNVSSIQITKSVS
GNEGKNGKRSSDTMGMKHRVDYGIYVTYGSMNPQLAERTGFSDEDAKVIMEILPKLFENDASSARPDGSMEVVSVIWWKH
GSKAGKHSSAKVHKSLHVNEDGTYRLDDLEGLTPECINGF
>Mature_279_residues
STLNQKIDFAIIMRVTNANPNGDPLNGNRPRTDLDGHGEMTDVCLKRKIRNRIMELKDKEQKYQFDIFVQPDDSKRDSHT
SLKARFESEIGKNVKDKDDAAKKACKKWFDVRAFGQLFAFDGEESSGLSIPVRGPVSIHSAFSVEPVNVSSIQITKSVSG
NEGKNGKRSSDTMGMKHRVDYGIYVTYGSMNPQLAERTGFSDEDAKVIMEILPKLFENDASSARPDGSMEVVSVIWWKHG
SKAGKHSSAKVHKSLHVNEDGTYRLDDLEGLTPECINGF

Specific function: Unknown

COG id: COG3649

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31231; Mature: 31100

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLNQKIDFAIIMRVTNANPNGDPLNGNRPRTDLDGHGEMTDVCLKRKIRNRIMELKDK
CCCCHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
EQKYQFDIFVQPDDSKRDSHTSLKARFESEIGKNVKDKDDAAKKACKKWFDVRAFGQLFA
CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEE
FDGEESSGLSIPVRGPVSIHSAFSVEPVNVSSIQITKSVSGNEGKNGKRSSDTMGMKHRV
ECCCCCCCCEEECCCCCEECCCCEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEC
DYGIYVTYGSMNPQLAERTGFSDEDAKVIMEILPKLFENDASSARPDGSMEVVSVIWWKH
CEEEEEEECCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECC
GSKAGKHSSAKVHKSLHVNEDGTYRLDDLEGLTPECINGF
CCCCCCCCHHHHHHEEEECCCCCEEECCCCCCCHHHHCCC
>Mature Secondary Structure 
STLNQKIDFAIIMRVTNANPNGDPLNGNRPRTDLDGHGEMTDVCLKRKIRNRIMELKDK
CCCHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
EQKYQFDIFVQPDDSKRDSHTSLKARFESEIGKNVKDKDDAAKKACKKWFDVRAFGQLFA
CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEE
FDGEESSGLSIPVRGPVSIHSAFSVEPVNVSSIQITKSVSGNEGKNGKRSSDTMGMKHRV
ECCCCCCCCEEECCCCCEECCCCEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEC
DYGIYVTYGSMNPQLAERTGFSDEDAKVIMEILPKLFENDASSARPDGSMEVVSVIWWKH
CEEEEEEECCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECC
GSKAGKHSSAKVHKSLHVNEDGTYRLDDLEGLTPECINGF
CCCCCCCCHHHHHHEEEECCCCCEEECCCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA