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The map label for this gene is nrfD [H]

Identifier: 78188920

GI number: 78188920

Start: 1289804

End: 1290718

Strand: Reverse

Name: nrfD [H]

Synonym: Cag_0952

Alternate gene names: 78188920

Gene position: 1290718-1289804 (Counterclockwise)

Preceding gene: 78188921

Following gene: 78188919

Centisome position: 50.18

GC content: 43.5

Gene sequence:

>915_bases
ATGACTTTTGTTCAACAAGAAGTTTGGCACTGGCAAATTGCCACTTACCTCTTTTTGGGTGGGCTTGGCGGCGCCACCTT
TTCCATTGGCGCTATTTTACACCTCTTTCAAGGGGTGAATAAAAAAATGCTCTCCATTGCGATTGCTTCCGCCCTTGGCT
TTTTGGTGATTGGCACCATTTTTCTTTTAGCCGATATGCTTCAGCCCATGAAAGCAATCTATGCCTTAACCAATCCCAAC
TCATGGATTTTTTGGGGTGTTATTTTTATTAACATTTACTTTCTTGCGGCTATTGCTTATCTCATCCCCTTGTTAGAAGT
GTGGCCACCATTACTTCCCTTCATTCAAAAAATCCCCCAACCCTTGCTGAGCTTGCTGGAACGCTACAACCGCCTTGCTG
CGCTTGGTGGTGCTGCCGCCGGCTTTTTAGTGGCAATTTATACGGGCTTGCTTATTTCCGCCGCACCAGCTATTACCTTT
TGGAACACACCGGCACTTCCACTGCTTTTTGTTGTCTCGGGATTTTCAACAGGTGCCGCATTTCTTTTATTGCTGACTAC
ATTTTGGGATGATGACACAAGCCATCAAGTAGCCGCAACCCTTGAACAACTTGATGCAATTCTCATTATTAGCGAGCTTA
TTGTGCTGGGAGCTTACTTTAACTTCGCCCTCTTCTTACCAACAGGCGCACGAGAATCGGCAGAATTTCTTTTCCATAGC
CCAATTTTTTTGATTGGCTTTTTTATTTTTGGATTAATAATTCCTCTTGCTCTTGAAACCTATGCCATCTTTTTTGCAAA
ACATTCAAAAAAATCCTTAACACTTCTGCGCTTAGCCAGCATTCTGATTTTACTTGGTGGCTACTTGCTCCGCATTTACG
TTCTGCAAGCGGGCTTTTACCAATATCCATGGTAA

Upstream 100 bases:

>100_bases
CAACTTGCTGTAAGCGGTAAAGCTACAGCGTTGAATGCAGGGCTTGGTACCTCACCCAAAGTATTTTACATCCCATCATA
ACGAAAGGAGAATTGCACTT

Downstream 100 bases:

>100_bases
CTTTTCTCCGCATAAAGCCATATTCCAATTGCACTCCATCACAACAATAGATGGAGTGCATTGTTTACCCATTCACCCAT
CAATCCCTACCATGCCTCAA

Product: polysulfide reductase, subunit C

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MTFVQQEVWHWQIATYLFLGGLGGATFSIGAILHLFQGVNKKMLSIAIASALGFLVIGTIFLLADMLQPMKAIYALTNPN
SWIFWGVIFINIYFLAAIAYLIPLLEVWPPLLPFIQKIPQPLLSLLERYNRLAALGGAAAGFLVAIYTGLLISAAPAITF
WNTPALPLLFVVSGFSTGAAFLLLLTTFWDDDTSHQVAATLEQLDAILIISELIVLGAYFNFALFLPTGARESAEFLFHS
PIFLIGFFIFGLIIPLALETYAIFFAKHSKKSLTLLRLASILILLGGYLLRIYVLQAGFYQYPW

Sequences:

>Translated_304_residues
MTFVQQEVWHWQIATYLFLGGLGGATFSIGAILHLFQGVNKKMLSIAIASALGFLVIGTIFLLADMLQPMKAIYALTNPN
SWIFWGVIFINIYFLAAIAYLIPLLEVWPPLLPFIQKIPQPLLSLLERYNRLAALGGAAAGFLVAIYTGLLISAAPAITF
WNTPALPLLFVVSGFSTGAAFLLLLTTFWDDDTSHQVAATLEQLDAILIISELIVLGAYFNFALFLPTGARESAEFLFHS
PIFLIGFFIFGLIIPLALETYAIFFAKHSKKSLTLLRLASILILLGGYLLRIYVLQAGFYQYPW
>Mature_303_residues
TFVQQEVWHWQIATYLFLGGLGGATFSIGAILHLFQGVNKKMLSIAIASALGFLVIGTIFLLADMLQPMKAIYALTNPNS
WIFWGVIFINIYFLAAIAYLIPLLEVWPPLLPFIQKIPQPLLSLLERYNRLAALGGAAAGFLVAIYTGLLISAAPAITFW
NTPALPLLFVVSGFSTGAAFLLLLTTFWDDDTSHQVAATLEQLDAILIISELIVLGAYFNFALFLPTGARESAEFLFHSP
IFLIGFFIFGLIIPLALETYAIFFAKHSKKSLTLLRLASILILLGGYLLRIYVLQAGFYQYPW

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG3301

COG function: function code P; Formate-dependent nitrite reductase, membrane component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nrfD family [H]

Homologues:

Organism=Escherichia coli, GI1790509, Length=325, Percent_Identity=26.1538461538462, Blast_Score=71, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017566
- InterPro:   IPR005614 [H]

Pfam domain/function: PF03916 NrfD [H]

EC number: NA

Molecular weight: Translated: 33635; Mature: 33503

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: PS00318 HMG_COA_REDUCTASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFVQQEVWHWQIATYLFLGGLGGATFSIGAILHLFQGVNKKMLSIAIASALGFLVIGTI
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
FLLADMLQPMKAIYALTNPNSWIFWGVIFINIYFLAAIAYLIPLLEVWPPLLPFIQKIPQ
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLLSLLERYNRLAALGGAAAGFLVAIYTGLLISAAPAITFWNTPALPLLFVVSGFSTGAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHCCCHHHH
FLLLLTTFWDDDTSHQVAATLEQLDAILIISELIVLGAYFNFALFLPTGARESAEFLFHS
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHH
PIFLIGFFIFGLIIPLALETYAIFFAKHSKKSLTLLRLASILILLGGYLLRIYVLQAGFY
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QYPW
CCCC
>Mature Secondary Structure 
TFVQQEVWHWQIATYLFLGGLGGATFSIGAILHLFQGVNKKMLSIAIASALGFLVIGTI
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
FLLADMLQPMKAIYALTNPNSWIFWGVIFINIYFLAAIAYLIPLLEVWPPLLPFIQKIPQ
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLLSLLERYNRLAALGGAAAGFLVAIYTGLLISAAPAITFWNTPALPLLFVVSGFSTGAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHCCCHHHH
FLLLLTTFWDDDTSHQVAATLEQLDAILIISELIVLGAYFNFALFLPTGARESAEFLFHS
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHH
PIFLIGFFIFGLIIPLALETYAIFFAKHSKKSLTLLRLASILILLGGYLLRIYVLQAGFY
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QYPW
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8057835; 8265357; 9278503 [H]