Click here to switch to the map view.

The map label for this gene is 78188840

Identifier: 78188840

GI number: 78188840

Start: 1200958

End: 1202160

Strand: Reverse

Name: 78188840

Synonym: Cag_0870

Alternate gene names: NA

Gene position: 1202160-1200958 (Counterclockwise)

Preceding gene: 78188841

Following gene: 78188839

Centisome position: 46.74

GC content: 48.71

Gene sequence:

>1203_bases
ATGATTAGTTTAGCAGGTCGCGATATTTTGCATGGATGGGTGCGCTTTATTATGACAGGCTTTGGGCTTGGGCTATTAAT
TGGCGTAACGCTCAGTATGGCAGGCATTTATCGTGGAATGGTGGATGATGCCAATGTGTTGATTGAAAACAGCGGCGCTG
ATTTATATGTGGTGCAGCAAGGTACTATTGGACCTTACGCCGAACCTTCAAGCATCTATCAAGATAGCTATCGCTCTATT
CTTGGAATGGAAGGTGTAGCGCGTGCGGCAAATGTAACCTACCTCACCATGCAGGTAAAAGGCAACGGCAGCGATGTGCG
GGCAATGGTTGTTGGCATAACACCGGGCAGTGTAGGGGAGCCAGGGCAGCCCACCTTTCTTGTTGCAGGGCGACATATTA
CCGCAAGCCATTACGAAGCCGTTGCCGACATCAAAAGTGGCTTTGCGCTTGGCGACACCATTACCATTCGTCGCCATCAC
TACAAAGTGGTAGGATTAACGCGGCGCATGGTCTCTTCAGGTGGCGATCCCATGATTTTTATTCCCTTAAAAGATGCGCA
AGAGGCACAATTCTTAAAAGATAATGATATGCTGCTTCAGCAACGGCGGCGCACCGCAGCAAATCCTCAACTTAATCCGC
CCGCCAACCCCAGTGTGCTTGATGCCGTTATTGCCTCGCAAACCACCAACTTGTCGGTTAACGCCGTTTTAGTGCAGCTT
AAAGAGGGCTACTTGCCTGAAACTGTTGCCCGCTCTCTTGAACGATGGCAGCGCTTTGAGGTTTATACTCGTGCTGAAAT
GCAACAAATTTTAGTTGAAAAAATGATTGCCACCTCCGCAAAGCAAATTGGCATGTTTCTTGTAATTCTTGCCATAGTGA
GTGCGGCAATTATTGCCTTTATCATTTACACCATGACGATGGCAAAAATCCGAGAAATAGCCGTGCTCAAGCTTATTGGC
ACGCGCAACCGCGTTATTGCCTCCATGATTTTGCAACAAGCGCTTGGGCTTGGAGCGCTTGGTTTTGTGGTGGGTAAAAT
TGTTGCCACACTCTGGTCGCCCTTTTTCCCGCGCTATGTGTTGCTGTTACCCGAAGATTCCATTCGTGGGTTTATGATTG
TTATGGTGATTTCTGCCCTTGCCAGCATTCTTGCCATTGCTGCCGCGCTCAAGGTGGATCCCGCAGAAGCTATTGGAGGG
TAA

Upstream 100 bases:

>100_bases
TGGTGGTTTATAGCAAAAGTGCGCTGAATGAGGGCAAGCGCATCACTATTGTAAAGCCCACTTCAAAGCAAGGGGCGCAA
GGGGTACAGGGGGGCTTGCA

Downstream 100 bases:

>100_bases
CCTATGGAAAGTAAAGGAATTATTATTGAAGGGCTTGTAAAGCATTACGGCAAGGGCGATACCTTAGTGCAGGCATTGAA
AGGGGTGGATATGCATGTTG

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MISLAGRDILHGWVRFIMTGFGLGLLIGVTLSMAGIYRGMVDDANVLIENSGADLYVVQQGTIGPYAEPSSIYQDSYRSI
LGMEGVARAANVTYLTMQVKGNGSDVRAMVVGITPGSVGEPGQPTFLVAGRHITASHYEAVADIKSGFALGDTITIRRHH
YKVVGLTRRMVSSGGDPMIFIPLKDAQEAQFLKDNDMLLQQRRRTAANPQLNPPANPSVLDAVIASQTTNLSVNAVLVQL
KEGYLPETVARSLERWQRFEVYTRAEMQQILVEKMIATSAKQIGMFLVILAIVSAAIIAFIIYTMTMAKIREIAVLKLIG
TRNRVIASMILQQALGLGALGFVVGKIVATLWSPFFPRYVLLLPEDSIRGFMIVMVISALASILAIAAALKVDPAEAIGG

Sequences:

>Translated_400_residues
MISLAGRDILHGWVRFIMTGFGLGLLIGVTLSMAGIYRGMVDDANVLIENSGADLYVVQQGTIGPYAEPSSIYQDSYRSI
LGMEGVARAANVTYLTMQVKGNGSDVRAMVVGITPGSVGEPGQPTFLVAGRHITASHYEAVADIKSGFALGDTITIRRHH
YKVVGLTRRMVSSGGDPMIFIPLKDAQEAQFLKDNDMLLQQRRRTAANPQLNPPANPSVLDAVIASQTTNLSVNAVLVQL
KEGYLPETVARSLERWQRFEVYTRAEMQQILVEKMIATSAKQIGMFLVILAIVSAAIIAFIIYTMTMAKIREIAVLKLIG
TRNRVIASMILQQALGLGALGFVVGKIVATLWSPFFPRYVLLLPEDSIRGFMIVMVISALASILAIAAALKVDPAEAIGG
>Mature_400_residues
MISLAGRDILHGWVRFIMTGFGLGLLIGVTLSMAGIYRGMVDDANVLIENSGADLYVVQQGTIGPYAEPSSIYQDSYRSI
LGMEGVARAANVTYLTMQVKGNGSDVRAMVVGITPGSVGEPGQPTFLVAGRHITASHYEAVADIKSGFALGDTITIRRHH
YKVVGLTRRMVSSGGDPMIFIPLKDAQEAQFLKDNDMLLQQRRRTAANPQLNPPANPSVLDAVIASQTTNLSVNAVLVQL
KEGYLPETVARSLERWQRFEVYTRAEMQQILVEKMIATSAKQIGMFLVILAIVSAAIIAFIIYTMTMAKIREIAVLKLIG
TRNRVIASMILQQALGLGALGFVVGKIVATLWSPFFPRYVLLLPEDSIRGFMIVMVISALASILAIAAALKVDPAEAIGG

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0577

COG function: function code V; ABC-type antimicrobial peptide transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-4 integral membrane protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003838 [H]

Pfam domain/function: PF02687 FtsX [H]

EC number: NA

Molecular weight: Translated: 43237; Mature: 43237

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISLAGRDILHGWVRFIMTGFGLGLLIGVTLSMAGIYRGMVDDANVLIENSGADLYVVQQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEC
GTIGPYAEPSSIYQDSYRSILGMEGVARAANVTYLTMQVKGNGSDVRAMVVGITPGSVGE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCEEEEEEEECCCCCCC
PGQPTFLVAGRHITASHYEAVADIKSGFALGDTITIRRHHYKVVGLTRRMVSSGGDPMIF
CCCCEEEEECCEEEHHHHHHHHHHHCCCEECCEEEEEEHEEEEHHHHHHHHHCCCCCEEE
IPLKDAQEAQFLKDNDMLLQQRRRTAANPQLNPPANPSVLDAVIASQTTNLSVNAVLVQL
EECCCCCHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHEEEEE
KEGYLPETVARSLERWQRFEVYTRAEMQQILVEKMIATSAKQIGMFLVILAIVSAAIIAF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIYTMTMAKIREIAVLKLIGTRNRVIASMILQQALGLGALGFVVGKIVATLWSPFFPRYV
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEE
LLLPEDSIRGFMIVMVISALASILAIAAALKVDPAEAIGG
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC
>Mature Secondary Structure
MISLAGRDILHGWVRFIMTGFGLGLLIGVTLSMAGIYRGMVDDANVLIENSGADLYVVQQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEC
GTIGPYAEPSSIYQDSYRSILGMEGVARAANVTYLTMQVKGNGSDVRAMVVGITPGSVGE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCEEEEEEEECCCCCCC
PGQPTFLVAGRHITASHYEAVADIKSGFALGDTITIRRHHYKVVGLTRRMVSSGGDPMIF
CCCCEEEEECCEEEHHHHHHHHHHHCCCEECCEEEEEEHEEEEHHHHHHHHHCCCCCEEE
IPLKDAQEAQFLKDNDMLLQQRRRTAANPQLNPPANPSVLDAVIASQTTNLSVNAVLVQL
EECCCCCHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHEEEEE
KEGYLPETVARSLERWQRFEVYTRAEMQQILVEKMIATSAKQIGMFLVILAIVSAAIIAF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIYTMTMAKIREIAVLKLIGTRNRVIASMILQQALGLGALGFVVGKIVATLWSPFFPRYV
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEE
LLLPEDSIRGFMIVMVISALASILAIAAALKVDPAEAIGG
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]