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The map label for this gene is yrrC [H]

Identifier: 78188817

GI number: 78188817

Start: 1177760

End: 1179976

Strand: Reverse

Name: yrrC [H]

Synonym: Cag_0847

Alternate gene names: 78188817

Gene position: 1179976-1177760 (Counterclockwise)

Preceding gene: 78188818

Following gene: 78188816

Centisome position: 45.88

GC content: 49.89

Gene sequence:

>2217_bases
ATGAGCGTTCAGGATGGGCAAGAATCCTACTATTATTCCCCCAAAGAGCGACTAAGTGGCGCGGTTGAAAGGGTAACCTT
TCATAGCCAAAAAAATGGCTTTTCAGTTCTCCGCATTAAAGTAAAAGGGCGTCGTGATTTAGTAACCGTTGTTGGTGCGA
CGCCCTCCATTGCGCCGGGTGAATTTGTGGAGTGCCTTGGAGAGTGGCACAACGATTCTACCTATGGTTTGCAATTCCGC
GCAACTGAGCTTACCGTTGTTCCCCCCGAAACCATTGATGGCATTGAAAAATACCTTGCTTCGGGCATGGTAAAAGGTAT
TGGTCCGCACTTTGCAAAAACCTTAGTGTATGCCTTTCGCGAAGATGTATTTACCGTTATAGAAGAGGAGCCTGAGCGCT
TGCTTGAGTTGCCCGGCATTGGGCAAAAGCGCATGGAAATGGTAACAAGCGCATGGGCTGACCAAAAGGTAATTCGCGAT
ATCATGGTCTTTTTGCAATCACACGGTTTAGGCACAAGCCGTGCGGTGCGCATTTTTAAAACCTACGGTAACGAGTCAAT
TTTGCGGGTTAAGGAGAATCCTTACCGCTTAGTGCTTGATATTTATGGCGTGGGTTTTAAAACGGCTGATGCTCTTGCTA
TGCAGCTTGGCATTGCCCCCGATTCGCTGATTCGTGCGCAAGCGGGCGTACACCATGTGTTGCAGGAAATTGCCTCATCG
GGGCATTGTGCGGCACCTCGTGAACAGCTTGTGGCTGAAGCGTCTCGCTTACTTAGCATCCCCGAAGAGCGTACTCACGA
GGCAATTGATGCTGAATTGCGAGCAGGCAACTTAGTGCGCGAAGAGCTGCGAGGCGTGGAAACACTCTACTTGCTTTCGC
TCCACCGTGCCGAACTTGGTGTAGCAACCTCCTTAATGCGCTTGCTTGAGGGCGAAATTCCCTGGAGGCACTTAGCCATT
GAGGAGGCGCTGCCGTGGGTTGAAGCACAAAACAATATCACCCTTTCACCCTCCCAAAAAGAGGCGCTCCATACAGCACT
TACCAACAAAGTAACTGTTATTACGGGCGGACCAGGTGTGGGTAAAACCACCTTAGTAAAAAGCATTCTGCTCATTTTGC
AAGCCCAAAAAGTGCGTGTGGCACTTTGCGCTCCTACAGGACGTGCAGCAAAACGCCTCTCAGAATCCACAGGACTTGAA
GCAAAAACCATCCACCGCTTGCTGGAATTTGATCCCCTAACGGGTGGCTTTAAACATCAACGCGATAATCCCTTAGAGTG
CGATTTAGTAGTGGTTGACGAAAGCTCGATGGTTGACGTAGTGCTTATGAACCGCTTGCTTGCCGCTGTGCCCGAAAAAG
CCGCTCTTCTGCTGATTGGCGATGTTGACCAGCTACCATCGGTAGGAGCAGGCGCCGTGCTTGCCGATATTATCCGCTCC
GAAACCATTCCCACCATTCGCTTAACCGAAATTTTTCGCCAAGCCGCTTCGTCGCGCATTATTATGAATGCCCACCGCAT
TAATAAGGGTGAACTGCCATTACGCGATGAAAGCAACACGTTAAGCGACTTTTACCTCATTGCAGCAAACACTCCCGAAG
AAATTTATAATCGCTTGCTTACCGTTATTACCGAGCGCATTCCTGCCCGCTTTGGGCTTCACCCCGTGCGCGACGTGCAA
GTGCTTACCCCCATGAATCGTGGAGGACTTGGCGCACGAGCGCTTAATGTGGAGCTGCAAAAAGTGCTAAATGGGCAGGT
AGAACCCTCCGTAACGCGCTTTGGCACTCGCTACGCCGCAGGCGATAAGGTGATTCAAATGGTCAACAATTACGATAAAG
AGGTCTTTAATGGCGATATTGGGCACATTAGCGCCGTTGAGCGCGAAGATGGCGCGGTGTTAGTTGACTTTGATGGAACA
CTCGTAAGCTATGAATTTGGGGAACTTGATGAGCTATCGCTTGCCTATGCAACCAGCATTCACAAAAGCCAAGGCTCCGA
ATATCCCGCAGTGGTAATTCCCCTTGCCATGCAACATTACAACCTTTTAGAACGCAACCTTATTTACACCGCCGTTACAC
GAGGCAAAAAGTTAGTGGTAATTATTGGCGAAACCCGCGCGCTTGCCATGGCAGTTAAAAACCACAAAGCTATGCGCCGC
CTTACAGGATTAGCAGAACGCCTTTCCGCCCTTGCTCGTTACGAAGCAAACTTGTAG

Upstream 100 bases:

>100_bases
GTGAAAAGGTGATGGTTGAATCAAAACAGGTTCCATCCTTTAAAATTTCTCGTGAATTTAAATTAGCCGTAAGCGAAAGC
TTGAAAAGCAGTGAACTCTA

Downstream 100 bases:

>100_bases
CTCAGCAGTAGGGGAGAGCCTCTCTTTTTTTACAGGGGAACAATTCCCGTGAACAGGAAATAATGCAACATGAAAAAGAT
CATTTACGTTACAGGAGGCG

Product: helicase RecD/TraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 738; Mature: 737

Protein sequence:

>738_residues
MSVQDGQESYYYSPKERLSGAVERVTFHSQKNGFSVLRIKVKGRRDLVTVVGATPSIAPGEFVECLGEWHNDSTYGLQFR
ATELTVVPPETIDGIEKYLASGMVKGIGPHFAKTLVYAFREDVFTVIEEEPERLLELPGIGQKRMEMVTSAWADQKVIRD
IMVFLQSHGLGTSRAVRIFKTYGNESILRVKENPYRLVLDIYGVGFKTADALAMQLGIAPDSLIRAQAGVHHVLQEIASS
GHCAAPREQLVAEASRLLSIPEERTHEAIDAELRAGNLVREELRGVETLYLLSLHRAELGVATSLMRLLEGEIPWRHLAI
EEALPWVEAQNNITLSPSQKEALHTALTNKVTVITGGPGVGKTTLVKSILLILQAQKVRVALCAPTGRAAKRLSESTGLE
AKTIHRLLEFDPLTGGFKHQRDNPLECDLVVVDESSMVDVVLMNRLLAAVPEKAALLLIGDVDQLPSVGAGAVLADIIRS
ETIPTIRLTEIFRQAASSRIIMNAHRINKGELPLRDESNTLSDFYLIAANTPEEIYNRLLTVITERIPARFGLHPVRDVQ
VLTPMNRGGLGARALNVELQKVLNGQVEPSVTRFGTRYAAGDKVIQMVNNYDKEVFNGDIGHISAVEREDGAVLVDFDGT
LVSYEFGELDELSLAYATSIHKSQGSEYPAVVIPLAMQHYNLLERNLIYTAVTRGKKLVVIIGETRALAMAVKNHKAMRR
LTGLAERLSALARYEANL

Sequences:

>Translated_738_residues
MSVQDGQESYYYSPKERLSGAVERVTFHSQKNGFSVLRIKVKGRRDLVTVVGATPSIAPGEFVECLGEWHNDSTYGLQFR
ATELTVVPPETIDGIEKYLASGMVKGIGPHFAKTLVYAFREDVFTVIEEEPERLLELPGIGQKRMEMVTSAWADQKVIRD
IMVFLQSHGLGTSRAVRIFKTYGNESILRVKENPYRLVLDIYGVGFKTADALAMQLGIAPDSLIRAQAGVHHVLQEIASS
GHCAAPREQLVAEASRLLSIPEERTHEAIDAELRAGNLVREELRGVETLYLLSLHRAELGVATSLMRLLEGEIPWRHLAI
EEALPWVEAQNNITLSPSQKEALHTALTNKVTVITGGPGVGKTTLVKSILLILQAQKVRVALCAPTGRAAKRLSESTGLE
AKTIHRLLEFDPLTGGFKHQRDNPLECDLVVVDESSMVDVVLMNRLLAAVPEKAALLLIGDVDQLPSVGAGAVLADIIRS
ETIPTIRLTEIFRQAASSRIIMNAHRINKGELPLRDESNTLSDFYLIAANTPEEIYNRLLTVITERIPARFGLHPVRDVQ
VLTPMNRGGLGARALNVELQKVLNGQVEPSVTRFGTRYAAGDKVIQMVNNYDKEVFNGDIGHISAVEREDGAVLVDFDGT
LVSYEFGELDELSLAYATSIHKSQGSEYPAVVIPLAMQHYNLLERNLIYTAVTRGKKLVVIIGETRALAMAVKNHKAMRR
LTGLAERLSALARYEANL
>Mature_737_residues
SVQDGQESYYYSPKERLSGAVERVTFHSQKNGFSVLRIKVKGRRDLVTVVGATPSIAPGEFVECLGEWHNDSTYGLQFRA
TELTVVPPETIDGIEKYLASGMVKGIGPHFAKTLVYAFREDVFTVIEEEPERLLELPGIGQKRMEMVTSAWADQKVIRDI
MVFLQSHGLGTSRAVRIFKTYGNESILRVKENPYRLVLDIYGVGFKTADALAMQLGIAPDSLIRAQAGVHHVLQEIASSG
HCAAPREQLVAEASRLLSIPEERTHEAIDAELRAGNLVREELRGVETLYLLSLHRAELGVATSLMRLLEGEIPWRHLAIE
EALPWVEAQNNITLSPSQKEALHTALTNKVTVITGGPGVGKTTLVKSILLILQAQKVRVALCAPTGRAAKRLSESTGLEA
KTIHRLLEFDPLTGGFKHQRDNPLECDLVVVDESSMVDVVLMNRLLAAVPEKAALLLIGDVDQLPSVGAGAVLADIIRSE
TIPTIRLTEIFRQAASSRIIMNAHRINKGELPLRDESNTLSDFYLIAANTPEEIYNRLLTVITERIPARFGLHPVRDVQV
LTPMNRGGLGARALNVELQKVLNGQVEPSVTRFGTRYAAGDKVIQMVNNYDKEVFNGDIGHISAVEREDGAVLVDFDGTL
VSYEFGELDELSLAYATSIHKSQGSEYPAVVIPLAMQHYNLLERNLIYTAVTRGKKLVVIIGETRALAMAVKNHKAMRRL
TGLAERLSALARYEANL

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=463, Percent_Identity=30.6695464362851, Blast_Score=151, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 81328; Mature: 81197

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: PS01228 COF_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVQDGQESYYYSPKERLSGAVERVTFHSQKNGFSVLRIKVKGRRDLVTVVGATPSIAPG
CCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCCEEEEEEECCCCEEEEEEECCCCCCCH
EFVECLGEWHNDSTYGLQFRATELTVVPPETIDGIEKYLASGMVKGIGPHFAKTLVYAFR
HHHHHHHHHCCCCEEEEEEEEEEEEEECCHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHH
EDVFTVIEEEPERLLELPGIGQKRMEMVTSAWADQKVIRDIMVFLQSHGLGTSRAVRIFK
HHHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEEE
TYGNESILRVKENPYRLVLDIYGVGFKTADALAMQLGIAPDSLIRAQAGVHHVLQEIASS
ECCCCEEEEEECCCEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
GHCAAPREQLVAEASRLLSIPEERTHEAIDAELRAGNLVREELRGVETLYLLSLHRAELG
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHH
VATSLMRLLEGEIPWRHLAIEEALPWVEAQNNITLSPSQKEALHTALTNKVTVITGGPGV
HHHHHHHHHCCCCCHHHHHHHHHCCCEECCCCEEECCCHHHHHHHHHCCCEEEEECCCCC
GKTTLVKSILLILQAQKVRVALCAPTGRAAKRLSESTGLEAKTIHRLLEFDPLTGGFKHQ
CHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
RDNPLECDLVVVDESSMVDVVLMNRLLAAVPEKAALLLIGDVDQLPSVGAGAVLADIIRS
CCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCCHHHHHHHHHH
ETIPTIRLTEIFRQAASSRIIMNAHRINKGELPLRDESNTLSDFYLIAANTPEEIYNRLL
CCCCEEHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHH
TVITERIPARFGLHPVRDVQVLTPMNRGGLGARALNVELQKVLNGQVEPSVTRFGTRYAA
HHHHHHCCHHCCCCCCCCEEEECCCCCCCCCCEEHHHHHHHHHCCCCCCCHHHHCCHHCC
GDKVIQMVNNYDKEVFNGDIGHISAVEREDGAVLVDFDGTLVSYEFGELDELSLAYATSI
HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCEEEEECCCCCHHHHHHHHHH
HKSQGSEYPAVVIPLAMQHYNLLERNLIYTAVTRGKKLVVIIGETRALAMAVKNHKAMRR
HHCCCCCCCEEEEEHHHHHHHHHHHHHHEEEECCCCEEEEEEECCHHHHHHHHHHHHHHH
LTGLAERLSALARYEANL
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SVQDGQESYYYSPKERLSGAVERVTFHSQKNGFSVLRIKVKGRRDLVTVVGATPSIAPG
CCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCCEEEEEEECCCCEEEEEEECCCCCCCH
EFVECLGEWHNDSTYGLQFRATELTVVPPETIDGIEKYLASGMVKGIGPHFAKTLVYAFR
HHHHHHHHHCCCCEEEEEEEEEEEEEECCHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHH
EDVFTVIEEEPERLLELPGIGQKRMEMVTSAWADQKVIRDIMVFLQSHGLGTSRAVRIFK
HHHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEEE
TYGNESILRVKENPYRLVLDIYGVGFKTADALAMQLGIAPDSLIRAQAGVHHVLQEIASS
ECCCCEEEEEECCCEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
GHCAAPREQLVAEASRLLSIPEERTHEAIDAELRAGNLVREELRGVETLYLLSLHRAELG
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHH
VATSLMRLLEGEIPWRHLAIEEALPWVEAQNNITLSPSQKEALHTALTNKVTVITGGPGV
HHHHHHHHHCCCCCHHHHHHHHHCCCEECCCCEEECCCHHHHHHHHHCCCEEEEECCCCC
GKTTLVKSILLILQAQKVRVALCAPTGRAAKRLSESTGLEAKTIHRLLEFDPLTGGFKHQ
CHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
RDNPLECDLVVVDESSMVDVVLMNRLLAAVPEKAALLLIGDVDQLPSVGAGAVLADIIRS
CCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCCHHHHHHHHHH
ETIPTIRLTEIFRQAASSRIIMNAHRINKGELPLRDESNTLSDFYLIAANTPEEIYNRLL
CCCCEEHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHH
TVITERIPARFGLHPVRDVQVLTPMNRGGLGARALNVELQKVLNGQVEPSVTRFGTRYAA
HHHHHHCCHHCCCCCCCCEEEECCCCCCCCCCEEHHHHHHHHHCCCCCCCHHHHCCHHCC
GDKVIQMVNNYDKEVFNGDIGHISAVEREDGAVLVDFDGTLVSYEFGELDELSLAYATSI
HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCEEEEECCCCCHHHHHHHHHH
HKSQGSEYPAVVIPLAMQHYNLLERNLIYTAVTRGKKLVVIIGETRALAMAVKNHKAMRR
HHCCCCCCCEEEEEHHHHHHHHHHHHHHEEEECCCCEEEEEEECCHHHHHHHHHHHHHHH
LTGLAERLSALARYEANL
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]