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The map label for this gene is tnpA [H]

Identifier: 78188684

GI number: 78188684

Start: 982852

End: 984087

Strand: Reverse

Name: tnpA [H]

Synonym: Cag_0708

Alternate gene names: 78188684

Gene position: 984087-982852 (Counterclockwise)

Preceding gene: 78188694

Following gene: 78188677

Centisome position: 38.26

GC content: 40.37

Gene sequence:

>1236_bases
ATGAAAGATACAGTTCTTTTTCAGCAAGCCTTGTGTTTACCAATGCCATGGTTTGTCAAATCATCAGCATTTGACATAGA
GCAAAAACGCCTCACCATCCAGCTTGATTTTCAGAAAGGGAGCACTTTTAGTTGCCCAACATGCGGTCAGCATGACTTAA
AAGCCTATGATACGGCAGAGAAACAGTGGCGTCATCTGAATTTTTTTCAGCATGAATGCTATTTAACAGCACGCGTACCA
AGGATTTCGTGCCCCACTTGTGGTGTTAAAGCAATCACTGATTTACCATGGGCGCGTCGCGACAGCGGCTTTACGCTCTT
GTTTGAAGCAATGATTATCGCATTAGTACCATCAATGCCCTGTAAAACGATAGCCAACTATGTTGGAGAACATGATAGCC
GTATCTGGCGCATTATTCATTACTACCTTGATGAGGCACTAGAACAGCAAGATTTATCAGCAGTTACCAAAGTTGGACTT
GATGAAACAGCTAGCAAGCGAGGGCACAACTATGTAACAAGCTTTGTTGATTTAGAGAGTTCAAAAGTGTTGTTCGTTAC
AGAAGGTAAAGATGCTACAACCGTTGAAAAATTTCATAAGCATTTGCTTGCTCATAAAGGTAAAGCTGAAAATATTAAAG
AAATTTGTTGCGATATGTCGCCAGCATTTATCAAAGGAGTTACTACCAACTTTCCTGAAACCCATATCACCTTTGATAAA
TTTCACATCATACAAGTCTTAACAAAAGCTGTTGATGAGGTGCGTCGTGAAGAACAAAAAGAGCGTCCTGAATTAGCTAA
AAGTCGCTATCTCTGGCTTAAAAATCAGGTGCATCTTAACCAATCACAACAAGTAAAATTGGAAAAGTTACAGCTCAAAA
AACTCAATTTGAAAACAGCGCGTGCTTATCAAGTGAAGCTGAATTTTCAAGAGTTTTTTAAGCAAGCCCCTGCCTATGCA
CAAAGCTTTCTCAATCAATGGTATTACTCGGCAAGCCATAGCCGTCTTGAACCAATCAAAGAGGCTGCACGAACTATTAA
GCGGCATTGGTATGGTATTCTCCGCTGGTTTACTTCAAACATTACCAACGGTAAATTAGAGGGGCTTAATAGTATGATTC
AAGCCGCTAAAGCTCGGGCTCGAGGTTACCGAACAACTAACAATCTTATCGCTATGATCTATTTTATTGGTAGTAAATTC
GAGTTTGCTTTACCTGCCCTTACCCACTCGAAATAG

Upstream 100 bases:

>100_bases
GAATGCCTAAAAAGTTTTTGCGATAAAACAAAATGGGCTCTTCGCTATTTTGAGTGGGTAAGGGAATAAGAAAGTACTAA
AAACAATCAGTTATCGGATC

Downstream 100 bases:

>100_bases
CGAGGAGCCACAAAATGCTTCCTGTTTCAGCATCAACCTTTTTTTCAAGCCCCATCGTATTTATTGACAATCCCATCGCC
CATTGCTCCTTCTGTTTTCT

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MKDTVLFQQALCLPMPWFVKSSAFDIEQKRLTIQLDFQKGSTFSCPTCGQHDLKAYDTAEKQWRHLNFFQHECYLTARVP
RISCPTCGVKAITDLPWARRDSGFTLLFEAMIIALVPSMPCKTIANYVGEHDSRIWRIIHYYLDEALEQQDLSAVTKVGL
DETASKRGHNYVTSFVDLESSKVLFVTEGKDATTVEKFHKHLLAHKGKAENIKEICCDMSPAFIKGVTTNFPETHITFDK
FHIIQVLTKAVDEVRREEQKERPELAKSRYLWLKNQVHLNQSQQVKLEKLQLKKLNLKTARAYQVKLNFQEFFKQAPAYA
QSFLNQWYYSASHSRLEPIKEAARTIKRHWYGILRWFTSNITNGKLEGLNSMIQAAKARARGYRTTNNLIAMIYFIGSKF
EFALPALTHSK

Sequences:

>Translated_411_residues
MKDTVLFQQALCLPMPWFVKSSAFDIEQKRLTIQLDFQKGSTFSCPTCGQHDLKAYDTAEKQWRHLNFFQHECYLTARVP
RISCPTCGVKAITDLPWARRDSGFTLLFEAMIIALVPSMPCKTIANYVGEHDSRIWRIIHYYLDEALEQQDLSAVTKVGL
DETASKRGHNYVTSFVDLESSKVLFVTEGKDATTVEKFHKHLLAHKGKAENIKEICCDMSPAFIKGVTTNFPETHITFDK
FHIIQVLTKAVDEVRREEQKERPELAKSRYLWLKNQVHLNQSQQVKLEKLQLKKLNLKTARAYQVKLNFQEFFKQAPAYA
QSFLNQWYYSASHSRLEPIKEAARTIKRHWYGILRWFTSNITNGKLEGLNSMIQAAKARARGYRTTNNLIAMIYFIGSKF
EFALPALTHSK
>Mature_411_residues
MKDTVLFQQALCLPMPWFVKSSAFDIEQKRLTIQLDFQKGSTFSCPTCGQHDLKAYDTAEKQWRHLNFFQHECYLTARVP
RISCPTCGVKAITDLPWARRDSGFTLLFEAMIIALVPSMPCKTIANYVGEHDSRIWRIIHYYLDEALEQQDLSAVTKVGL
DETASKRGHNYVTSFVDLESSKVLFVTEGKDATTVEKFHKHLLAHKGKAENIKEICCDMSPAFIKGVTTNFPETHITFDK
FHIIQVLTKAVDEVRREEQKERPELAKSRYLWLKNQVHLNQSQQVKLEKLQLKKLNLKTARAYQVKLNFQEFFKQAPAYA
QSFLNQWYYSASHSRLEPIKEAARTIKRHWYGILRWFTSNITNGKLEGLNSMIQAAKARARGYRTTNNLIAMIYFIGSKF
EFALPALTHSK

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG3464

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 12 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002560 [H]

Pfam domain/function: PF01610 Transposase_12 [H]

EC number: NA

Molecular weight: Translated: 47515; Mature: 47515

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDTVLFQQALCLPMPWFVKSSAFDIEQKRLTIQLDFQKGSTFSCPTCGQHDLKAYDTAE
CCCHHHHHHHHHCCCCHHHCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHH
KQWRHLNFFQHECYLTARVPRISCPTCGVKAITDLPWARRDSGFTLLFEAMIIALVPSMP
HHHHHCCHHHHEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC
CKTIANYVGEHDSRIWRIIHYYLDEALEQQDLSAVTKVGLDETASKRGHNYVTSFVDLES
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHEECCC
SKVLFVTEGKDATTVEKFHKHLLAHKGKAENIKEICCDMSPAFIKGVTTNFPETHITFDK
CEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHCCCCCCCCCCEEHHH
FHIIQVLTKAVDEVRREEQKERPELAKSRYLWLKNQVHLNQSQQVKLEKLQLKKLNLKTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECEEECCCCHHHHHHHHHHHHCCCCEE
RAYQVKLNFQEFFKQAPAYAQSFLNQWYYSASHSRLEPIKEAARTIKRHWYGILRWFTSN
EEEEEEECHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
ITNGKLEGLNSMIQAAKARARGYRTTNNLIAMIYFIGSKFEFALPALTHSK
CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHEEEEHHCCCCCEECCCCCCCC
>Mature Secondary Structure
MKDTVLFQQALCLPMPWFVKSSAFDIEQKRLTIQLDFQKGSTFSCPTCGQHDLKAYDTAE
CCCHHHHHHHHHCCCCHHHCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHH
KQWRHLNFFQHECYLTARVPRISCPTCGVKAITDLPWARRDSGFTLLFEAMIIALVPSMP
HHHHHCCHHHHEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC
CKTIANYVGEHDSRIWRIIHYYLDEALEQQDLSAVTKVGLDETASKRGHNYVTSFVDLES
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHEECCC
SKVLFVTEGKDATTVEKFHKHLLAHKGKAENIKEICCDMSPAFIKGVTTNFPETHITFDK
CEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHCCCCCCCCCCEEHHH
FHIIQVLTKAVDEVRREEQKERPELAKSRYLWLKNQVHLNQSQQVKLEKLQLKKLNLKTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECEEECCCCHHHHHHHHHHHHCCCCEE
RAYQVKLNFQEFFKQAPAYAQSFLNQWYYSASHSRLEPIKEAARTIKRHWYGILRWFTSN
EEEEEEECHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
ITNGKLEGLNSMIQAAKARARGYRTTNNLIAMIYFIGSKFEFALPALTHSK
CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHEEEEHHCCCCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8093238 [H]