| Definition | Chlorobium chlorochromatii CaD3 chromosome, complete genome. |
|---|---|
| Accession | NC_007514 |
| Length | 2,572,079 |
Click here to switch to the map view.
The map label for this gene is ppdK [H]
Identifier: 78188138
GI number: 78188138
Start: 174339
End: 177089
Strand: Reverse
Name: ppdK [H]
Synonym: Cag_0155
Alternate gene names: 78188138
Gene position: 177089-174339 (Counterclockwise)
Preceding gene: 78188140
Following gene: 78188137
Centisome position: 6.89
GC content: 46.56
Gene sequence:
>2751_bases ATGCCAAATCCAGAGAAGACCAACGAACAGGCTGCAAAAAAACAGTACCTCTACAGTTTTGCGGGCGGTGCCTCCGACGG TGACGCCTCCATGAAAAATCTGCTTGGTGGCAAAGGCGCAAACCTTGCAGAAATGGCAAACATAGGACTGCCAGTTCCTC CAGGATTCACCATCTCCACCGAAGTCTGCACTTACTACTACGATAATCAGAAAAACTATCCACCCAACCTTTTTGAGCAA GATATTCCTGACGCTCTCAGTAAAATTGAATATATGCTTGGCAAAAAATTTGGTGACCCCGTAAATCCGCTACTTGTTTC TGTTCGCTCCGGTGCTCGTGCTTCAATGCCCGGCATGATGGATACCATTCTTAACCTCGGTTTAAACTCCCAAACAGTTG ATGGACTTGCTAAAAGATCGGGTAACCCCCGTTTTGCTTGGGATTGCTACCGTCGTTTTGTACAAATGTATGGCGATGTA GTGCTCGATTTAAAGCCTACCAATAAAAAAGAGATTGACCCCTTTGAAAAAATTCTTGAAGAGAAAAAGCATGAGCGTGG CATTACGCTCGACACTGAGTTTACGGTTGAAGATTTACAAGACCTTGTAAGCCGCTACAAAGCCGCTATTCTTGAAAAAA CGGGCAGAACCTTCCCTGAAGATCCACACGAACAACTTCGTGGAGCTATTGGCGCTGTATTTGGCAGTTGGAACAACGAG CGTGCTATTATTTACCGCAAGCTCAACCACATTCCCGGTTATTGGGGTACCGCTTGTAACGTACAAGCTATGGTGTTTGG TAACATGGGTGAAGATTGCGGTACGGGCGTTGCCTTTACGCGCGATGCCGCAACCGGCGAAAACATTTTCTACGGTGAAT TCTTAATGAATGCGCAAGGTGAAGATGTGGTTGCAGGTACCAGAACCCCGCTGAAAATTGAGCAACTTAAAGCCAACAAG CCTGATATTTATGACCAACTTGAAGAGATTCGTTCCTCTCTTGAGCGCCACTATCGCGATATGATGGATATTGAGTTCAC CATTGAAAGCAATACGCTCTTTATGTTGCAATGCCGTGTTGGTAAGCGCACAGGTATGGCTGCTGTTAAGATTGCTGTTG ATATGTTTAACGAAGGGCTTATTGATGAAAAAGAGGCTCTTATGCGTATTGAGCCGGAACAACTCAACCAGTTGCTTCGC CCTGTCTTTAATATGAAGGAAAAACAAGCGGCTATTAGCGGTGGACGTTTGCTTGCAACCGGTTTAAATGCAGGTCCGGG TGCTGCTACGGGTAAAATTTACTTCAACGCTGTTGATGCCTACGAGGCAAGCAAAAAAGGCGAGGCGGTTGTTTTAGTTC GTATTGAAACTTCCCCTGAGGATATTAAAGGTATGGCGGTTGCTGAAGGTATTCTTACCGAACGTGGTGGCATGACCTCA CACGCCGCTCTTGTGGCTCGCCAAATGGGTAAGGTGTGCGTTGCTGGTTGTGGTGCCTTGCAAATTGATTATCAAAAAGG TGAAATGCGCGTTGCAGGCAAAGATATTGTGCTCAGCGAAGGCGACTACATTTCAATTGATGGCAGCACGGGTGAAGTTA TTGCTGGCAAGGTTGCAACCAAAAACTCCGAGATTCTTGAGGTGCTGATTGATAAAACCTTAAAGCCTGAAGATGCTTCC ACATGGCCTATTTACAAGCAATTAATGAAGTGGGCTGATAAATATCGTAAGCTAAAAATTCGTACCAACGCTGACCAACC AGATCAAGCCGATATTGCAGTAACCTTTGGCGCTGAAGGTATTGGGCTCTGCCGCACCGAGCACATGTTCTTTGGCGGCG AGCGTATTGATGCAATGCGCGAAATGATTCTTGCTGATGATATTACCGGACGCCAAAAAGCACTTGAAAAACTACTCCCT TACCAACGCGAAGACTTTTACGGACTCTTTAAGTGCATGGGCGAACGTCCTGTAACCATCCGCTTGCTTGATCCACCGCT TCATGAGTTCCTCCCTCACACCGATGCTGAAATTACGGCACTTGCTGCTAAAATTGGCAAGAGCTATGAAGAGGTGAACA TGCGTATTGAGCACTTGCATGAGTTTAACCCCATGCTTGGCTTGCGTGGTTGCCGCCTTGGCATTCTCCACCCCGAAATT GCGGTTATGCAGGTTCGCGCTATTATTGAAGCTGCTTGCCAATTGAAAAAAGAGGGGCTGGAAGTAATTCCCGAAATTAT GGTACCGCTTGTTAGCACGGTTAAAGAGCTTGAAATCACCAGTGAAATTATTCACAAAACCGCTCGCAGCGTTTTTGCCG AACAAGGCATTGGGGTGCAGTACTTGGTTGGCACCATGATTGAAGTGCCTCGTGCCGCCATTACCTCCGACCAAATTGCA ACGGTTGCCGACTTCTTTAGCTACGGCACCAACGACTTAACACAAATGGGACTTGGTATGAGCCGCGACGATTCAGGGCA GTTCCTCCCAACCTATCAGCAGCAAGAAATTTTTGCACGCAACCCATTTGAATCATTGGATATTGATGGTGTAGGACGCT TAATGAGCATTTCAGCAAAAGATGGACGTGCTGTTAAAGCTGACTTAAAGCTTGGTATTTGTGGTGAACATGGTGGCGAT CCTGCAACCGTTGAGTTCTGCCATAAACTTGGCTTGAACTATGTTTCATGCAGTCCATTCCGTGTACCAATTGCTCGCCT TGCCGCCGCAAGAGCAGCATTGCAAGATTAA
Upstream 100 bases:
>100_bases ACCACTATGGGAACGCACGTTTTTGCCGTGCGCTCGCCTATTTTTCTTTTTTTATAGGTAAAAACAATAGGTGTATCAAC ATAATTTATTCCCGAACATC
Downstream 100 bases:
>100_bases ATTTTTGCATAATTCCATTGTGAAAAAGGCGGCGATAAGTCGCCTTTTTCATTAAACAGAGCTATCTCTCTAAAAGGTAA TGGCATAGCAATACAATTAT
Product: pyruvate phosphate dikinase
Products: NA
Alternate protein names: Pyruvate, orthophosphate dikinase [H]
Number of amino acids: Translated: 916; Mature: 915
Protein sequence:
>916_residues MPNPEKTNEQAAKKQYLYSFAGGASDGDASMKNLLGGKGANLAEMANIGLPVPPGFTISTEVCTYYYDNQKNYPPNLFEQ DIPDALSKIEYMLGKKFGDPVNPLLVSVRSGARASMPGMMDTILNLGLNSQTVDGLAKRSGNPRFAWDCYRRFVQMYGDV VLDLKPTNKKEIDPFEKILEEKKHERGITLDTEFTVEDLQDLVSRYKAAILEKTGRTFPEDPHEQLRGAIGAVFGSWNNE RAIIYRKLNHIPGYWGTACNVQAMVFGNMGEDCGTGVAFTRDAATGENIFYGEFLMNAQGEDVVAGTRTPLKIEQLKANK PDIYDQLEEIRSSLERHYRDMMDIEFTIESNTLFMLQCRVGKRTGMAAVKIAVDMFNEGLIDEKEALMRIEPEQLNQLLR PVFNMKEKQAAISGGRLLATGLNAGPGAATGKIYFNAVDAYEASKKGEAVVLVRIETSPEDIKGMAVAEGILTERGGMTS HAALVARQMGKVCVAGCGALQIDYQKGEMRVAGKDIVLSEGDYISIDGSTGEVIAGKVATKNSEILEVLIDKTLKPEDAS TWPIYKQLMKWADKYRKLKIRTNADQPDQADIAVTFGAEGIGLCRTEHMFFGGERIDAMREMILADDITGRQKALEKLLP YQREDFYGLFKCMGERPVTIRLLDPPLHEFLPHTDAEITALAAKIGKSYEEVNMRIEHLHEFNPMLGLRGCRLGILHPEI AVMQVRAIIEAACQLKKEGLEVIPEIMVPLVSTVKELEITSEIIHKTARSVFAEQGIGVQYLVGTMIEVPRAAITSDQIA TVADFFSYGTNDLTQMGLGMSRDDSGQFLPTYQQQEIFARNPFESLDIDGVGRLMSISAKDGRAVKADLKLGICGEHGGD PATVEFCHKLGLNYVSCSPFRVPIARLAAARAALQD
Sequences:
>Translated_916_residues MPNPEKTNEQAAKKQYLYSFAGGASDGDASMKNLLGGKGANLAEMANIGLPVPPGFTISTEVCTYYYDNQKNYPPNLFEQ DIPDALSKIEYMLGKKFGDPVNPLLVSVRSGARASMPGMMDTILNLGLNSQTVDGLAKRSGNPRFAWDCYRRFVQMYGDV VLDLKPTNKKEIDPFEKILEEKKHERGITLDTEFTVEDLQDLVSRYKAAILEKTGRTFPEDPHEQLRGAIGAVFGSWNNE RAIIYRKLNHIPGYWGTACNVQAMVFGNMGEDCGTGVAFTRDAATGENIFYGEFLMNAQGEDVVAGTRTPLKIEQLKANK PDIYDQLEEIRSSLERHYRDMMDIEFTIESNTLFMLQCRVGKRTGMAAVKIAVDMFNEGLIDEKEALMRIEPEQLNQLLR PVFNMKEKQAAISGGRLLATGLNAGPGAATGKIYFNAVDAYEASKKGEAVVLVRIETSPEDIKGMAVAEGILTERGGMTS HAALVARQMGKVCVAGCGALQIDYQKGEMRVAGKDIVLSEGDYISIDGSTGEVIAGKVATKNSEILEVLIDKTLKPEDAS TWPIYKQLMKWADKYRKLKIRTNADQPDQADIAVTFGAEGIGLCRTEHMFFGGERIDAMREMILADDITGRQKALEKLLP YQREDFYGLFKCMGERPVTIRLLDPPLHEFLPHTDAEITALAAKIGKSYEEVNMRIEHLHEFNPMLGLRGCRLGILHPEI AVMQVRAIIEAACQLKKEGLEVIPEIMVPLVSTVKELEITSEIIHKTARSVFAEQGIGVQYLVGTMIEVPRAAITSDQIA TVADFFSYGTNDLTQMGLGMSRDDSGQFLPTYQQQEIFARNPFESLDIDGVGRLMSISAKDGRAVKADLKLGICGEHGGD PATVEFCHKLGLNYVSCSPFRVPIARLAAARAALQD >Mature_915_residues PNPEKTNEQAAKKQYLYSFAGGASDGDASMKNLLGGKGANLAEMANIGLPVPPGFTISTEVCTYYYDNQKNYPPNLFEQD IPDALSKIEYMLGKKFGDPVNPLLVSVRSGARASMPGMMDTILNLGLNSQTVDGLAKRSGNPRFAWDCYRRFVQMYGDVV LDLKPTNKKEIDPFEKILEEKKHERGITLDTEFTVEDLQDLVSRYKAAILEKTGRTFPEDPHEQLRGAIGAVFGSWNNER AIIYRKLNHIPGYWGTACNVQAMVFGNMGEDCGTGVAFTRDAATGENIFYGEFLMNAQGEDVVAGTRTPLKIEQLKANKP DIYDQLEEIRSSLERHYRDMMDIEFTIESNTLFMLQCRVGKRTGMAAVKIAVDMFNEGLIDEKEALMRIEPEQLNQLLRP VFNMKEKQAAISGGRLLATGLNAGPGAATGKIYFNAVDAYEASKKGEAVVLVRIETSPEDIKGMAVAEGILTERGGMTSH AALVARQMGKVCVAGCGALQIDYQKGEMRVAGKDIVLSEGDYISIDGSTGEVIAGKVATKNSEILEVLIDKTLKPEDAST WPIYKQLMKWADKYRKLKIRTNADQPDQADIAVTFGAEGIGLCRTEHMFFGGERIDAMREMILADDITGRQKALEKLLPY QREDFYGLFKCMGERPVTIRLLDPPLHEFLPHTDAEITALAAKIGKSYEEVNMRIEHLHEFNPMLGLRGCRLGILHPEIA VMQVRAIIEAACQLKKEGLEVIPEIMVPLVSTVKELEITSEIIHKTARSVFAEQGIGVQYLVGTMIEVPRAAITSDQIAT VADFFSYGTNDLTQMGLGMSRDDSGQFLPTYQQQEIFARNPFESLDIDGVGRLMSISAKDGRAVKADLKLGICGEHGGDP ATVEFCHKLGLNYVSCSPFRVPIARLAAARAALQD
Specific function: Catalyzes the reversible phosphorylation of pyruvate and phosphate. In E.histolytica and C.symbiosus, PPDK functions in the direction of ATP synthesis [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1787994, Length=717, Percent_Identity=25.5230125523013, Blast_Score=100, Evalue=3e-22, Organism=Escherichia coli, GI1789193, Length=446, Percent_Identity=24.6636771300448, Blast_Score=99, Evalue=1e-21, Organism=Escherichia coli, GI1788756, Length=462, Percent_Identity=22.5108225108225, Blast_Score=88, Evalue=3e-18, Organism=Escherichia coli, GI48994992, Length=451, Percent_Identity=24.390243902439, Blast_Score=71, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR010121 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.1 [H]
Molecular weight: Translated: 101069; Mature: 100938
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNPEKTNEQAAKKQYLYSFAGGASDGDASMKNLLGGKGANLAEMANIGLPVPPGFTIST CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEEH EVCTYYYDNQKNYPPNLFEQDIPDALSKIEYMLGKKFGDPVNPLLVSVRSGARASMPGMM EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEECCCCCCCCCHHH DTILNLGLNSQTVDGLAKRSGNPRFAWDCYRRFVQMYGDVVLDLKPTNKKEIDPFEKILE HHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHH EKKHERGITLDTEFTVEDLQDLVSRYKAAILEKTGRTFPEDPHEQLRGAIGAVFGSWNNE HHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCC RAIIYRKLNHIPGYWGTACNVQAMVFGNMGEDCGTGVAFTRDAATGENIFYGEFLMNAQG CEEEEEEHHCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCEEEEHEEECCCC EDVVAGTRTPLKIEQLKANKPDIYDQLEEIRSSLERHYRDMMDIEFTIESNTLFMLQCRV CCEEECCCCCEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEEEEEEEC GKRTGMAAVKIAVDMFNEGLIDEKEALMRIEPEQLNQLLRPVFNMKEKQAAISGGRLLAT CCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHCCHHHHHHHCCCEEEEE GLNAGPGAATGKIYFNAVDAYEASKKGEAVVLVRIETSPEDIKGMAVAEGILTERGGMTS CCCCCCCCCCCEEEEEEEHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCHH HAALVARQMGKVCVAGCGALQIDYQKGEMRVAGKDIVLSEGDYISIDGSTGEVIAGKVAT HHHHHHHHHHHHHHCCCCEEEEEECCCCEEECCCEEEEECCCEEEECCCCCCEEEEEEEC KNSEILEVLIDKTLKPEDASTWPIYKQLMKWADKYRKLKIRTNADQPDQADIAVTFGAEG CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCCEEEEECCCC IGLCRTEHMFFGGERIDAMREMILADDITGRQKALEKLLPYQREDFYGLFKCMGERPVTI CCEEEECCEEECCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCEEE RLLDPPLHEFLPHTDAEITALAAKIGKSYEEVNMRIEHLHEFNPMLGLRGCRLGILHPEI EEECCCHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHH AVMQVRAIIEAACQLKKEGLEVIPEIMVPLVSTVKELEITSEIIHKTARSVFAEQGIGVQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH YLVGTMIEVPRAAITSDQIATVADFFSYGTNDLTQMGLGMSRDDSGQFLPTYQQQEIFAR HHHHHHHHCCHHHHCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHC NPFESLDIDGVGRLMSISAKDGRAVKADLKLGICGEHGGDPATVEFCHKLGLNYVSCSPF CCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHCCCEEECCCC RVPIARLAAARAALQD HHHHHHHHHHHHHHCC >Mature Secondary Structure PNPEKTNEQAAKKQYLYSFAGGASDGDASMKNLLGGKGANLAEMANIGLPVPPGFTIST CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEEH EVCTYYYDNQKNYPPNLFEQDIPDALSKIEYMLGKKFGDPVNPLLVSVRSGARASMPGMM EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEECCCCCCCCCHHH DTILNLGLNSQTVDGLAKRSGNPRFAWDCYRRFVQMYGDVVLDLKPTNKKEIDPFEKILE HHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHH EKKHERGITLDTEFTVEDLQDLVSRYKAAILEKTGRTFPEDPHEQLRGAIGAVFGSWNNE HHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCC RAIIYRKLNHIPGYWGTACNVQAMVFGNMGEDCGTGVAFTRDAATGENIFYGEFLMNAQG CEEEEEEHHCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCEEEEHEEECCCC EDVVAGTRTPLKIEQLKANKPDIYDQLEEIRSSLERHYRDMMDIEFTIESNTLFMLQCRV CCEEECCCCCEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEEEEEEEC GKRTGMAAVKIAVDMFNEGLIDEKEALMRIEPEQLNQLLRPVFNMKEKQAAISGGRLLAT CCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHCCHHHHHHHCCCEEEEE GLNAGPGAATGKIYFNAVDAYEASKKGEAVVLVRIETSPEDIKGMAVAEGILTERGGMTS CCCCCCCCCCCEEEEEEEHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCHH HAALVARQMGKVCVAGCGALQIDYQKGEMRVAGKDIVLSEGDYISIDGSTGEVIAGKVAT HHHHHHHHHHHHHHCCCCEEEEEECCCCEEECCCEEEEECCCEEEECCCCCCEEEEEEEC KNSEILEVLIDKTLKPEDASTWPIYKQLMKWADKYRKLKIRTNADQPDQADIAVTFGAEG CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCCEEEEECCCC IGLCRTEHMFFGGERIDAMREMILADDITGRQKALEKLLPYQREDFYGLFKCMGERPVTI CCEEEECCEEECCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCEEE RLLDPPLHEFLPHTDAEITALAAKIGKSYEEVNMRIEHLHEFNPMLGLRGCRLGILHPEI EEECCCHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHH AVMQVRAIIEAACQLKKEGLEVIPEIMVPLVSTVKELEITSEIIHKTARSVFAEQGIGVQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH YLVGTMIEVPRAAITSDQIATVADFFSYGTNDLTQMGLGMSRDDSGQFLPTYQQQEIFAR HHHHHHHHCCHHHHCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHC NPFESLDIDGVGRLMSISAKDGRAVKADLKLGICGEHGGDPATVEFCHKLGLNYVSCSPF CCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHCCCEEECCCC RVPIARLAAARAALQD HHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2176881; 6257292; 11695893; 11468288; 8610096; 9753432 [H]