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The map label for this gene is 78188086

Identifier: 78188086

GI number: 78188086

Start: 117743

End: 118165

Strand: Reverse

Name: 78188086

Synonym: Cag_0103

Alternate gene names: NA

Gene position: 118165-117743 (Counterclockwise)

Preceding gene: 78188087

Following gene: 78188085

Centisome position: 4.59

GC content: 50.83

Gene sequence:

>423_bases
ATGAGCATGAAACCATTTCTTCCCTTTGTAGCCGCAAGCTTCCTCTTTATCAGCGCTTGCGGACTTGAAAAACCACCAGC
CTCCCTTGAATTACCAAGCAAAGAGAAAGAAGCCACAACCGAAGCCGCTCCTGCACCAGCAGCTCCAGCCGCTGCACCTG
GCGATCCACTTGCAGCAGGCAAAACCGTGTATGAAGGAAGCTGCGGCGGCTGCCACGATGCTGGTATGATGGGCGCACCA
AAACCAGGCGACAAAGCAGCTTGGAAAGATCGCTTACCTCAAGGTGTTGAAGCTATGGCGAAAAAATCAATTGAAGGTTT
CCAAGGCAAAGCTGGTATGATGCCCGCAAAAGGCGGCAATGCAAGCCTAACGGATGAAGAAGTTACTAACGCAGTTGCCT
ATATGGCTGATTTGTCGAAGTAA

Upstream 100 bases:

>100_bases
GCAATCGCATGGAATAGCAGGCTAAACCCGATGCCACATCCTTGCCACAAAGCAAGAGAGAACAAAACAGAGCATAAACC
ACTAAACAAGTAAACTCACT

Downstream 100 bases:

>100_bases
TCAAGATTGGTTGGCTGACGGCGAATATGTTTTATCGAAAGCGGGAGTTGAGCGTTATGGCTTAACGCCCGCTTTTTTGT
TATGGAGAAAAAAAAGAAAT

Product: cytochrome c-555, membrane-bound

Products: NA

Alternate protein names: Cytochrome c555 [H]

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MSMKPFLPFVAASFLFISACGLEKPPASLELPSKEKEATTEAAPAPAAPAAAPGDPLAAGKTVYEGSCGGCHDAGMMGAP
KPGDKAAWKDRLPQGVEAMAKKSIEGFQGKAGMMPAKGGNASLTDEEVTNAVAYMADLSK

Sequences:

>Translated_140_residues
MSMKPFLPFVAASFLFISACGLEKPPASLELPSKEKEATTEAAPAPAAPAAAPGDPLAAGKTVYEGSCGGCHDAGMMGAP
KPGDKAAWKDRLPQGVEAMAKKSIEGFQGKAGMMPAKGGNASLTDEEVTNAVAYMADLSK
>Mature_139_residues
SMKPFLPFVAASFLFISACGLEKPPASLELPSKEKEATTEAAPAPAAPAAAPGDPLAAGKTVYEGSCGGCHDAGMMGAPK
PGDKAAWKDRLPQGVEAMAKKSIEGFQGKAGMMPAKGGNASLTDEEVTNAVAYMADLSK

Specific function: This basic c-type monoheme cytochrome has been found exclusively in the green photosynthetic bacteria, although its role in bacterial photosynthesis is not established. It has an unusually low redox potential compared with mitochondrial cytochrome c. It i

COG id: COG3245

COG function: function code C; Cytochrome c5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR002323 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 14215; Mature: 14084

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMKPFLPFVAASFLFISACGLEKPPASLELPSKEKEATTEAAPAPAAPAAAPGDPLAAG
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
KTVYEGSCGGCHDAGMMGAPKPGDKAAWKDRLPQGVEAMAKKSIEGFQGKAGMMPAKGGN
CEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
ASLTDEEVTNAVAYMADLSK
CCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SMKPFLPFVAASFLFISACGLEKPPASLELPSKEKEATTEAAPAPAAPAAAPGDPLAAG
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
KTVYEGSCGGCHDAGMMGAPKPGDKAAWKDRLPQGVEAMAKKSIEGFQGKAGMMPAKGGN
CEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
ASLTDEEVTNAVAYMADLSK
CCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]