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The map label for this gene is 78188006

Identifier: 78188006

GI number: 78188006

Start: 22529

End: 23458

Strand: Reverse

Name: 78188006

Synonym: Cag_0022

Alternate gene names: NA

Gene position: 23458-22529 (Counterclockwise)

Preceding gene: 78188009

Following gene: 78187997

Centisome position: 0.91

GC content: 41.94

Gene sequence:

>930_bases
ATGAAAAAAATTTTAAGCATTGATGGCGGCGGCATTCGTGGGCTGATTCCTGCCCTTGTACTTGCTGAAATTGAAGCGCA
AAGCGGCAAAGCTATTGGAGCAACCTTTGATTTAATTGCAGGAACATCAACGGGTGGCTTGCTTGCCTTAGGATTTGCGA
AAAATGATGGAAACGGCAAAGCGCAATATTCTGCTAACAACCTTGCCGATATTTATCTATCACGCGGCAATGAAATATTT
TCTAAATCGTTCTTAAAAAGTGTTGCCTCCGTTGAAGGTTTGCGGGATGAGCTGTATTCTGCCAATGGCATTGAGCATGT
TTTGGACGATTACTTTGGCGATGATCCTTTAAGTTCCTGCATTACGAAGAGTTTGGTAACATGCTACGATATTCAAAATA
GAGAGCCACTCTTTTTAAAAAGTTGGCGAGAAGAGTATCAGTCGGTATTAATGAAACATGCTGCGAGGGCAACTTCAGCA
GCACCCACCTATTTTGAACCCGCTTTGATACCAATTGGCGGAGCAACAAAAGCGTTAGTTGATGGCGCTGTCTATATTAA
CACGCCAAGCGTATCGGCATACGCCGAAGCACTCAAGCTCTTTGAGGATGAACAAGATTTTTTTGTGCTATCACTTGGCA
CGGGGGAATTAATTCGCCCTATTTCTTACGATAAATCAAAAAATTGGGGAAAAGCTGAGTGGGTTGTGCCTTTGCTGAGT
TGTATGTTTGATGGTATGGCTGATGCCGCCAATTACCAAATGAAAATGTTGCTTGACGATAAATACGTTCGTTTGCAAAC
CAATCTTTCGGTTGCTTCAGATGATTTGGATAATGTTACTGCCAATAATCTGGAAAATTTGATCCTTGAAAGCCAAAAGC
TTATTCGCACCCATCGTCAAGTAATTGATATGGTTTGCTCACTGCTTTGA

Upstream 100 bases:

>100_bases
AATAAGAAGTCAAGAGAAGATGAAAGTAACGCTATACATTATGGTATTTTACAGACTATCTTAAACAAAGTTACTCCTCA
TTGTTTAACGGGAAATTATT

Downstream 100 bases:

>100_bases
TGGGCTGAATAACGAAAAACCTCTATTCAGCAGTTCACTCATGGTTAAAGTGGTGTTTAACGCCTTATCAACAGCGCTCA
GCGTAAATGCAAATAGGCTC

Product: patatin family protein

Products: NA

Alternate protein names: Patatin Family Protein; Patatin-Like Phospholipase; Phospholipase Patatin Family; Patatin-Like Protein; Patatin-Related Protein; Patatin-Like Phospholipase Family

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MKKILSIDGGGIRGLIPALVLAEIEAQSGKAIGATFDLIAGTSTGGLLALGFAKNDGNGKAQYSANNLADIYLSRGNEIF
SKSFLKSVASVEGLRDELYSANGIEHVLDDYFGDDPLSSCITKSLVTCYDIQNREPLFLKSWREEYQSVLMKHAARATSA
APTYFEPALIPIGGATKALVDGAVYINTPSVSAYAEALKLFEDEQDFFVLSLGTGELIRPISYDKSKNWGKAEWVVPLLS
CMFDGMADAANYQMKMLLDDKYVRLQTNLSVASDDLDNVTANNLENLILESQKLIRTHRQVIDMVCSLL

Sequences:

>Translated_309_residues
MKKILSIDGGGIRGLIPALVLAEIEAQSGKAIGATFDLIAGTSTGGLLALGFAKNDGNGKAQYSANNLADIYLSRGNEIF
SKSFLKSVASVEGLRDELYSANGIEHVLDDYFGDDPLSSCITKSLVTCYDIQNREPLFLKSWREEYQSVLMKHAARATSA
APTYFEPALIPIGGATKALVDGAVYINTPSVSAYAEALKLFEDEQDFFVLSLGTGELIRPISYDKSKNWGKAEWVVPLLS
CMFDGMADAANYQMKMLLDDKYVRLQTNLSVASDDLDNVTANNLENLILESQKLIRTHRQVIDMVCSLL
>Mature_309_residues
MKKILSIDGGGIRGLIPALVLAEIEAQSGKAIGATFDLIAGTSTGGLLALGFAKNDGNGKAQYSANNLADIYLSRGNEIF
SKSFLKSVASVEGLRDELYSANGIEHVLDDYFGDDPLSSCITKSLVTCYDIQNREPLFLKSWREEYQSVLMKHAARATSA
APTYFEPALIPIGGATKALVDGAVYINTPSVSAYAEALKLFEDEQDFFVLSLGTGELIRPISYDKSKNWGKAEWVVPLLS
CMFDGMADAANYQMKMLLDDKYVRLQTNLSVASDDLDNVTANNLENLILESQKLIRTHRQVIDMVCSLL

Specific function: Unknown

COG id: COG3621

COG function: function code R; Patatin

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI52486251, Length=358, Percent_Identity=28.2122905027933, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI52486194, Length=358, Percent_Identity=28.2122905027933, Blast_Score=69, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17544092, Length=315, Percent_Identity=27.6190476190476, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI212646132, Length=229, Percent_Identity=31.0043668122271, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17551040, Length=239, Percent_Identity=27.6150627615063, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI45551543, Length=249, Percent_Identity=30.1204819277108, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI45551542, Length=249, Percent_Identity=30.1204819277108, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI45551541, Length=249, Percent_Identity=30.1204819277108, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI45550585, Length=249, Percent_Identity=30.1204819277108, Blast_Score=72, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33687; Mature: 33687

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKILSIDGGGIRGLIPALVLAEIEAQSGKAIGATFDLIAGTSTGGLLALGFAKNDGNGK
CCCEEECCCCCHHHHHHHHHHHHHHHCCCCEECCEEEEEECCCCCCEEEEEEEECCCCCC
AQYSANNLADIYLSRGNEIFSKSFLKSVASVEGLRDELYSANGIEHVLDDYFGDDPLSSC
EEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH
ITKSLVTCYDIQNREPLFLKSWREEYQSVLMKHAARATSAAPTYFEPALIPIGGATKALV
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHH
DGAVYINTPSVSAYAEALKLFEDEQDFFVLSLGTGELIRPISYDKSKNWGKAEWVVPLLS
CCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
CMFDGMADAANYQMKMLLDDKYVRLQTNLSVASDDLDNVTANNLENLILESQKLIRTHRQ
HHHHHHCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VIDMVCSLL
HHHHHHHHC
>Mature Secondary Structure
MKKILSIDGGGIRGLIPALVLAEIEAQSGKAIGATFDLIAGTSTGGLLALGFAKNDGNGK
CCCEEECCCCCHHHHHHHHHHHHHHHCCCCEECCEEEEEECCCCCCEEEEEEEECCCCCC
AQYSANNLADIYLSRGNEIFSKSFLKSVASVEGLRDELYSANGIEHVLDDYFGDDPLSSC
EEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH
ITKSLVTCYDIQNREPLFLKSWREEYQSVLMKHAARATSAAPTYFEPALIPIGGATKALV
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHH
DGAVYINTPSVSAYAEALKLFEDEQDFFVLSLGTGELIRPISYDKSKNWGKAEWVVPLLS
CCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
CMFDGMADAANYQMKMLLDDKYVRLQTNLSVASDDLDNVTANNLENLILESQKLIRTHRQ
HHHHHHCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VIDMVCSLL
HHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA