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The map label for this gene is ygcF [H]

Identifier: 78067938

GI number: 78067938

Start: 3636233

End: 3636865

Strand: Reverse

Name: ygcF [H]

Synonym: Bcep18194_A6469

Alternate gene names: 78067938

Gene position: 3636865-3636233 (Counterclockwise)

Preceding gene: 78067939

Following gene: 78067937

Centisome position: 98.45

GC content: 65.72

Gene sequence:

>633_bases
ATGACTTACGCGGTCAAGGAAATTTTCTACACGTTGCAGGGCGAGGGCGCGAACGCGGGCCGGCCGGCCGTGTTCTGCCG
GTTCGCCGGCTGCAACCTGTGGTCGGGCCGCGAAGAGGATCGTGCGGAGGCCGTGTGCCGCTTCTGCGATACCGACTTCG
TCGGCACCGACGGCGAGAACGGCGGCAAGTTCAAGGACGCCGAAGCGCTCGTCGCGACGATCGCCGGCCTGTGGCCGGAG
GGCGAGGCGCACCGCTTCGTCGTCTGCACGGGCGGCGAGCCGATGCTGCAGCTCGACCAGCCGCTCGTCGACGCGCTGCA
CGCGGCCGGCTTCGAAATCGCGATCGAGACCAACGGCTCGCTGCCGGTGCTCGAATCGATCGACTGGATCTGCGTGAGCC
CGAAGGCTGACGCGCCGCTCGTCGTCACGAAGGGCAACGAGCTGAAGGTCGTGATCCCGCAGGACAACCAGCGGCTGGCC
GACTACGCGAAGCTCGACTTCGAGTATTACCTCGTCCAGCCGATGGACGGCCCGTCGCGCGACCTCAATACGAAGCTCGC
GATCGACTGGTGCAAGCGTCATCCGCAGTGGCGGCTGTCGATGCAGACCCACAAATATCTGAACATTCCCTGA

Upstream 100 bases:

>100_bases
GCGGGTGACCGAAGCGCCGCTGTGATGCAGCAGCAACGGCGGCGCCTGGTGATTAACGGATTCTGATCGACAACGAGCGG
CGCGAGCCGGACGAAGCACG

Downstream 100 bases:

>100_bases
GCCCCGGCTTTTGACATCGTGCTGATTACCCGAAAACTCGAATTCGACGCGGGCCACCGCATTCCCGATCACCGCAGCCA
GTGCCGGAACCTGCATGGCC

Product: organic radical activating-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGGKFKDAEALVATIAGLWPE
GEAHRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSLPVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLA
DYAKLDFEYYLVQPMDGPSRDLNTKLAIDWCKRHPQWRLSMQTHKYLNIP

Sequences:

>Translated_210_residues
MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGGKFKDAEALVATIAGLWPE
GEAHRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSLPVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLA
DYAKLDFEYYLVQPMDGPSRDLNTKLAIDWCKRHPQWRLSMQTHKYLNIP
>Mature_209_residues
TYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGGKFKDAEALVATIAGLWPEG
EAHRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSLPVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLAD
YAKLDFEYYLVQPMDGPSRDLNTKLAIDWCKRHPQWRLSMQTHKYLNIP

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=235, Percent_Identity=33.6170212765957, Blast_Score=91, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 23310; Mature: 23178

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN
CCEEEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
GGKFKDAEALVATIAGLWPEGEAHRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGS
CCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEECCHHHHHHHHHCCEEEEEECCCC
LPVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYYLVQPMDGPSR
CCHHHCCCEEEECCCCCCCEEEECCCEEEEEECCCCCHHHHHHHCCEEEEEEECCCCCCC
DLNTKLAIDWCKRHPQWRLSMQTHKYLNIP
CCCCEEEEEHHHCCCCEEEEEECCEEECCC
>Mature Secondary Structure 
TYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN
CEEEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
GGKFKDAEALVATIAGLWPEGEAHRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGS
CCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEECCHHHHHHHHHCCEEEEEECCCC
LPVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYYLVQPMDGPSR
CCHHHCCCEEEECCCCCCCEEEECCCEEEEEECCCCCHHHHHHHCCEEEEEEECCCCCCC
DLNTKLAIDWCKRHPQWRLSMQTHKYLNIP
CCCCEEEEEHHHCCCCEEEEEECCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]