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The map label for this gene is yqhC [H]

Identifier: 78067923

GI number: 78067923

Start: 3619644

End: 3620600

Strand: Reverse

Name: yqhC [H]

Synonym: Bcep18194_A6454

Alternate gene names: 78067923

Gene position: 3620600-3619644 (Counterclockwise)

Preceding gene: 78067925

Following gene: 78067914

Centisome position: 98.01

GC content: 69.49

Gene sequence:

>957_bases
ATGAGCTTCGAGCCCCTTTTCGCCGATACAGGCGACCGCGTGCAGCGCCGCATGGTCGAGCTGCATACGCGCCTCGCGCC
GAACGAGGGCGACACGCTCGCGGCGCTCGACGGCGTGCGCTTCATCCGCGTGAGCCGGCCGGGGCCGCGCATGCCCGTGT
TGTACGAGCCGAGCATCGTCGTCGTGTGCCAGGGGCGCAAGCTCGGCTATCTCGGCGAGCGCTCGTTCGTGTACGACGCG
CAGCAATATCTCGTGCTGTCGGTGCCGCTGCCGTTCGAATGCGAGACCTTCGCGAGCCAGGACGAGCCGTTTCTCGCGAT
CTCGATCCGCGTCGATCTCGCGGTGATCGCCGAGCTCGCGATCCTGCTCGACGAGACGCTCGGAGTGCCCGTCAGCGAGC
CGCTCGGCGTGGATTCGACGCCGCTCGACGCGCCGCTGGCCGATGCGGTCGTGCGGTTGCTCGAAGCGCTCGCGTCGCCG
CACGACACACGTGTGCTGGGCCCCGCGATCATGCGCGAGATCGCGTATCGGGTGCTGACGGGCGAGCAGGGCGATGCGAT
CCGCGCGGCGCTCGTCCAGCAGCATCACTTCGGCCGTATCGCGAAGGCGCTGCGGCGCATCCATGCGGACCTGAAGGCCG
ACCTCGACGTCGAGACGCTCGCGCGCGAGGCCGGCATGAGTCTCGCGGTGTTCCATGCGCAGTTCAAGCACGTGACGGCA
ACCTCGCCGATGCAGTACGTGAAGACCGCGCGGCTGCACCAGGCGCGGCTGATGATGGTGCAGGACGGGGTGGGCGCCGG
CGCGGCGGCCGCGCGCGTCGGCTATGCGAGCGCGTCGCAGTTCAGCCGTGAGTTCAAGCGGCTGTTCGGCCGCAGTCCGG
GTGACGAGGTGCGCTGGATGCGCGAAAGCGGAAGCCGGCCGGTTGGCGATCGGGCGGCGATCGACCTGACGACCTGA

Upstream 100 bases:

>100_bases
GATTTGCCTATTCCTCTCTAAGTGCGTCCAAACAGCCGTCAAAACCTGTTCAAGGTGCTACATTGCGAGCCGGATTCTCT
TGCCGGACAGGACCACGCAG

Downstream 100 bases:

>100_bases
GCGAACGGCGGCGCGCAGCGGGGGTGCCACGCGCGGGGAAGCGGTGTGCAGCGCTGCCGCGTGCTCAGCGCCGCACGACC
TTGCGACGCTGCGCGCTGAT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MSFEPLFADTGDRVQRRMVELHTRLAPNEGDTLAALDGVRFIRVSRPGPRMPVLYEPSIVVVCQGRKLGYLGERSFVYDA
QQYLVLSVPLPFECETFASQDEPFLAISIRVDLAVIAELAILLDETLGVPVSEPLGVDSTPLDAPLADAVVRLLEALASP
HDTRVLGPAIMREIAYRVLTGEQGDAIRAALVQQHHFGRIAKALRRIHADLKADLDVETLAREAGMSLAVFHAQFKHVTA
TSPMQYVKTARLHQARLMMVQDGVGAGAAAARVGYASASQFSREFKRLFGRSPGDEVRWMRESGSRPVGDRAAIDLTT

Sequences:

>Translated_318_residues
MSFEPLFADTGDRVQRRMVELHTRLAPNEGDTLAALDGVRFIRVSRPGPRMPVLYEPSIVVVCQGRKLGYLGERSFVYDA
QQYLVLSVPLPFECETFASQDEPFLAISIRVDLAVIAELAILLDETLGVPVSEPLGVDSTPLDAPLADAVVRLLEALASP
HDTRVLGPAIMREIAYRVLTGEQGDAIRAALVQQHHFGRIAKALRRIHADLKADLDVETLAREAGMSLAVFHAQFKHVTA
TSPMQYVKTARLHQARLMMVQDGVGAGAAAARVGYASASQFSREFKRLFGRSPGDEVRWMRESGSRPVGDRAAIDLTT
>Mature_317_residues
SFEPLFADTGDRVQRRMVELHTRLAPNEGDTLAALDGVRFIRVSRPGPRMPVLYEPSIVVVCQGRKLGYLGERSFVYDAQ
QYLVLSVPLPFECETFASQDEPFLAISIRVDLAVIAELAILLDETLGVPVSEPLGVDSTPLDAPLADAVVRLLEALASPH
DTRVLGPAIMREIAYRVLTGEQGDAIRAALVQQHHFGRIAKALRRIHADLKADLDVETLAREAGMSLAVFHAQFKHVTAT
SPMQYVKTARLHQARLMMVQDGVGAGAAAARVGYASASQFSREFKRLFGRSPGDEVRWMRESGSRPVGDRAAIDLTT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=291, Percent_Identity=44.3298969072165, Blast_Score=254, Evalue=6e-69,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34856; Mature: 34724

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFEPLFADTGDRVQRRMVELHTRLAPNEGDTLAALDGVRFIRVSRPGPRMPVLYEPSIV
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEECCCCCCCCEEECCCEE
VVCQGRKLGYLGERSFVYDAQQYLVLSVPLPFECETFASQDEPFLAISIRVDLAVIAELA
EEECCCCCCCCCCCCCEEECCEEEEEECCCCCCCHHHCCCCCCEEEEEEEHHHHHHHHHH
ILLDETLGVPVSEPLGVDSTPLDAPLADAVVRLLEALASPHDTRVLGPAIMREIAYRVLT
HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
GEQGDAIRAALVQQHHFGRIAKALRRIHADLKADLDVETLAREAGMSLAVFHAQFKHVTA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCEEEEEHHHHHHHCC
TSPMQYVKTARLHQARLMMVQDGVGAGAAAARVGYASASQFSREFKRLFGRSPGDEVRWM
CCHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHH
RESGSRPVGDRAAIDLTT
HHCCCCCCCCCCEEEECC
>Mature Secondary Structure 
SFEPLFADTGDRVQRRMVELHTRLAPNEGDTLAALDGVRFIRVSRPGPRMPVLYEPSIV
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEECCCCCCCCEEECCCEE
VVCQGRKLGYLGERSFVYDAQQYLVLSVPLPFECETFASQDEPFLAISIRVDLAVIAELA
EEECCCCCCCCCCCCCEEECCEEEEEECCCCCCCHHHCCCCCCEEEEEEEHHHHHHHHHH
ILLDETLGVPVSEPLGVDSTPLDAPLADAVVRLLEALASPHDTRVLGPAIMREIAYRVLT
HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
GEQGDAIRAALVQQHHFGRIAKALRRIHADLKADLDVETLAREAGMSLAVFHAQFKHVTA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCEEEEEHHHHHHHCC
TSPMQYVKTARLHQARLMMVQDGVGAGAAAARVGYASASQFSREFKRLFGRSPGDEVRWM
CCHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHH
RESGSRPVGDRAAIDLTT
HHCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]