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The map label for this gene is xerD [C]

Identifier: 78067678

GI number: 78067678

Start: 3363425

End: 3364336

Strand: Reverse

Name: xerD [C]

Synonym: Bcep18194_A6209

Alternate gene names: 78067678

Gene position: 3364336-3363425 (Counterclockwise)

Preceding gene: 78067680

Following gene: 78067677

Centisome position: 91.07

GC content: 55.26

Gene sequence:

>912_bases
GTGGCGTGGTTGCAGTATTTGCAGAGCGTGCAGAAGTGCTTGGAGGACGCAACGGAGCAAGACGTCAAGCTTTACCGCAA
CAAGTTAATCCACGGTTCTTCGACAGACGAATACCGCCGCTACTCTGCCTCAACGGTGAATCTGCGGACTATGACAGCGG
TCCGATTTCATATGTGGGGCCAGCTATCTCGACAGATGCCGAGCCCACTTGGCGAGTGGGCTGTCGGGCGAGATCGTGGT
CGCCTGTTCCGTCGATTCGCAGCATACGCGCCGCATCGGAGGCAGATCGTTCGGGCCCCTGAAAGCAGGTTGCCTCGGAT
ACTCGGAGCGGAGCAGTTGCGCGCGTTGCTTTCATGTACCCCTCAGCCCTATCGACTGATTTTCCGATGGGCTGTCTGCA
CTGGACTGCGTCGCTTCGAATTGTGCGGACTCAGGAAATCGGACTTGCCATTGGGCGCCGCGAAAAAGTCGACAATCGAG
CAGCTTAATCTCGTCAGAAAAGGTGGTCGAACTGTAACAGTGTATGCGCCGTCACGGCTTATCGACGAGACGCGCTGGTA
CGTGCTATCTGATAGACCAAAAGCTGCACCGACCTATGAATCGTTTATTTTTCTGAATGCACGAGGCCGAAGAATCGACC
GAACGGCACTTTCGGCAGCATTTCGGCGAGCGGCAGATGCGGCGGGAATCGATGCAACGTTACATCACCTGCGGCATACA
TATGCGGTCACGGCACTCAAGTACCTTCAGGAGCGAGCGCACAACGGAGACTCAATCAATCCTCTGAAAACTCTCCAGAT
GCTGCTGGGACACACGGCAATCGAAACCACAGAAATTTATCTTCGCGCGTTGGACGCCAACTCGGCAGCGGTTCAGGAAG
CGCTGGACTTTTTGTACGGAGGAACATTGTGA

Upstream 100 bases:

>100_bases
TGGTTTGCCACACTGGGCAGCAACGTTTTACGCATTAGATCAGGCACTAAATAGCAACAGCGTCACAGGAGACACTGTCC
GCACGTATGGAGAAGCTATT

Downstream 100 bases:

>100_bases
GCGATGGATCAAGTCTCGATGTCCCACCAGTCACCTTCGTGATCAAAGATCGCCAAGGAAACTCTCGCACGCTACTCGAT
TTCTCAGAGCTGAATCTTTC

Product: Phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MAWLQYLQSVQKCLEDATEQDVKLYRNKLIHGSSTDEYRRYSASTVNLRTMTAVRFHMWGQLSRQMPSPLGEWAVGRDRG
RLFRRFAAYAPHRRQIVRAPESRLPRILGAEQLRALLSCTPQPYRLIFRWAVCTGLRRFELCGLRKSDLPLGAAKKSTIE
QLNLVRKGGRTVTVYAPSRLIDETRWYVLSDRPKAAPTYESFIFLNARGRRIDRTALSAAFRRAADAAGIDATLHHLRHT
YAVTALKYLQERAHNGDSINPLKTLQMLLGHTAIETTEIYLRALDANSAAVQEALDFLYGGTL

Sequences:

>Translated_303_residues
MAWLQYLQSVQKCLEDATEQDVKLYRNKLIHGSSTDEYRRYSASTVNLRTMTAVRFHMWGQLSRQMPSPLGEWAVGRDRG
RLFRRFAAYAPHRRQIVRAPESRLPRILGAEQLRALLSCTPQPYRLIFRWAVCTGLRRFELCGLRKSDLPLGAAKKSTIE
QLNLVRKGGRTVTVYAPSRLIDETRWYVLSDRPKAAPTYESFIFLNARGRRIDRTALSAAFRRAADAAGIDATLHHLRHT
YAVTALKYLQERAHNGDSINPLKTLQMLLGHTAIETTEIYLRALDANSAAVQEALDFLYGGTL
>Mature_302_residues
AWLQYLQSVQKCLEDATEQDVKLYRNKLIHGSSTDEYRRYSASTVNLRTMTAVRFHMWGQLSRQMPSPLGEWAVGRDRGR
LFRRFAAYAPHRRQIVRAPESRLPRILGAEQLRALLSCTPQPYRLIFRWAVCTGLRRFELCGLRKSDLPLGAAKKSTIEQ
LNLVRKGGRTVTVYAPSRLIDETRWYVLSDRPKAAPTYESFIFLNARGRRIDRTALSAAFRRAADAAGIDATLHHLRHTY
AVTALKYLQERAHNGDSINPLKTLQMLLGHTAIETTEIYLRALDANSAAVQEALDFLYGGTL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34520; Mature: 34389

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAWLQYLQSVQKCLEDATEQDVKLYRNKLIHGSSTDEYRRYSASTVNLRTMTAVRFHMWG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEHHHHHHHHHHHHH
QLSRQMPSPLGEWAVGRDRGRLFRRFAAYAPHRRQIVRAPESRLPRILGAEQLRALLSCT
HHHHHCCCCHHHHCCCCHHHHHHHHHHHHCCHHHHHHCCCHHHCHHHHCHHHHHHHHHCC
PQPYRLIFRWAVCTGLRRFELCGLRKSDLPLGAAKKSTIEQLNLVRKGGRTVTVYAPSRL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHH
IDETRWYVLSDRPKAAPTYESFIFLNARGRRIDRTALSAAFRRAADAAGIDATLHHLRHT
HHCCCEEEECCCCCCCCCHHHEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
YAVTALKYLQERAHNGDSINPLKTLQMLLGHTAIETTEIYLRALDANSAAVQEALDFLYG
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHC
GTL
CCC
>Mature Secondary Structure 
AWLQYLQSVQKCLEDATEQDVKLYRNKLIHGSSTDEYRRYSASTVNLRTMTAVRFHMWG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEHHHHHHHHHHHHH
QLSRQMPSPLGEWAVGRDRGRLFRRFAAYAPHRRQIVRAPESRLPRILGAEQLRALLSCT
HHHHHCCCCHHHHCCCCHHHHHHHHHHHHCCHHHHHHCCCHHHCHHHHCHHHHHHHHHCC
PQPYRLIFRWAVCTGLRRFELCGLRKSDLPLGAAKKSTIEQLNLVRKGGRTVTVYAPSRL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHH
IDETRWYVLSDRPKAAPTYESFIFLNARGRRIDRTALSAAFRRAADAAGIDATLHHLRHT
HHCCCEEEECCCCCCCCCHHHEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
YAVTALKYLQERAHNGDSINPLKTLQMLLGHTAIETTEIYLRALDANSAAVQEALDFLYG
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHC
GTL
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA