Click here to switch to the map view.

The map label for this gene is 78067635

Identifier: 78067635

GI number: 78067635

Start: 3316360

End: 3316977

Strand: Reverse

Name: 78067635

Synonym: Bcep18194_A6166

Alternate gene names: NA

Gene position: 3316977-3316360 (Counterclockwise)

Preceding gene: 78067636

Following gene: 78067633

Centisome position: 89.79

GC content: 66.67

Gene sequence:

>618_bases
ATGCTCCACTCACGGTTCGGGCGCCGCGCGCGCCAAGGCTGGATGCTCGCATGCGCATTCACGGCAGCACTGCTGCTCGC
CGGATGCGACAACGCGCCGAAATTCCAGAATCTCGACATCACCGGCAACACGCAGTTCGGCAGCGACTTCTCGCTGCCCG
ATACGGCCGGCAAGGTGCACACGCTCGCCGACTTCAAGGGCCGTGCCGTCGTGATGTTCTTCGGCTATACGCACTGCCCG
GACGTGTGCCCGACGACGATGGCCGAGCTGTCCGAAGCGCTGAAGCAGCTCGGGCCCGATGCCGCGAAGCGCGTGCAGGT
GCTGTTCGTCACTGTCGACCCGGAGCGTGATACGCCGGCGCTGCTCGGCCAGTACGTGCCCGCGTTCGATCCGTCGTTCA
TCGGCCTGCGGCCGGCCGACGAAGCGGCACTGAAGAAGGTCACGAAGGATTTCCGCGTGTACTACGCGAAGGTGCCCGGC
AAGACGCCCGGCAGCTACACGATGGATCACACGGCCGCGAGCTACGTGTTCGACCGCGACGGCAAGCTGCGCCTGTTCGT
GCGCGACGGCCAGGGCCCCGGCCCGTGGGTCCACGACCTGAAGCTGCTGGTCGACTGA

Upstream 100 bases:

>100_bases
CCGCTACTCGATCGTCTACCTGTCGCTGCTGTTCGCCGCGCTGCTCGTCGATCACTATGCACGCCCGCTGCTCGGCGTGT
AACCGCACGGTTTGAACGCA

Downstream 100 bases:

>100_bases
CCGCAGCCGCCGGGCGCCCGCCCGGCGATCACGTGACGGCCGCCACGCGCCGTCACGCTTTCCCGCTCTCTTCGTTGTTG
GCATGCGCCGCCCGTCAGGC

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MLHSRFGRRARQGWMLACAFTAALLLAGCDNAPKFQNLDITGNTQFGSDFSLPDTAGKVHTLADFKGRAVVMFFGYTHCP
DVCPTTMAELSEALKQLGPDAAKRVQVLFVTVDPERDTPALLGQYVPAFDPSFIGLRPADEAALKKVTKDFRVYYAKVPG
KTPGSYTMDHTAASYVFDRDGKLRLFVRDGQGPGPWVHDLKLLVD

Sequences:

>Translated_205_residues
MLHSRFGRRARQGWMLACAFTAALLLAGCDNAPKFQNLDITGNTQFGSDFSLPDTAGKVHTLADFKGRAVVMFFGYTHCP
DVCPTTMAELSEALKQLGPDAAKRVQVLFVTVDPERDTPALLGQYVPAFDPSFIGLRPADEAALKKVTKDFRVYYAKVPG
KTPGSYTMDHTAASYVFDRDGKLRLFVRDGQGPGPWVHDLKLLVD
>Mature_205_residues
MLHSRFGRRARQGWMLACAFTAALLLAGCDNAPKFQNLDITGNTQFGSDFSLPDTAGKVHTLADFKGRAVVMFFGYTHCP
DVCPTTMAELSEALKQLGPDAAKRVQVLFVTVDPERDTPALLGQYVPAFDPSFIGLRPADEAALKKVTKDFRVYYAKVPG
KTPGSYTMDHTAASYVFDRDGKLRLFVRDGQGPGPWVHDLKLLVD

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=134, Percent_Identity=38.0597014925373, Blast_Score=105, Evalue=3e-23,
Organism=Homo sapiens, GI281182722, Length=134, Percent_Identity=38.0597014925373, Blast_Score=105, Evalue=3e-23,
Organism=Homo sapiens, GI281182716, Length=134, Percent_Identity=38.0597014925373, Blast_Score=105, Evalue=3e-23,
Organism=Homo sapiens, GI153791313, Length=134, Percent_Identity=38.0597014925373, Blast_Score=105, Evalue=3e-23,
Organism=Homo sapiens, GI4759068, Length=147, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17531419, Length=146, Percent_Identity=32.8767123287671, Blast_Score=91, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6319498, Length=143, Percent_Identity=33.5664335664336, Blast_Score=99, Evalue=6e-22,
Organism=Saccharomyces cerevisiae, GI6319511, Length=144, Percent_Identity=35.4166666666667, Blast_Score=97, Evalue=1e-21,
Organism=Drosophila melanogaster, GI19920710, Length=143, Percent_Identity=34.965034965035, Blast_Score=106, Evalue=8e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22531; Mature: 22531

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHSRFGRRARQGWMLACAFTAALLLAGCDNAPKFQNLDITGNTQFGSDFSLPDTAGKVH
CCCCHHHHHHHCCEEHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEE
TLADFKGRAVVMFFGYTHCPDVCPTTMAELSEALKQLGPDAAKRVQVLFVTVDPERDTPA
EEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCHH
LLGQYVPAFDPSFIGLRPADEAALKKVTKDFRVYYAKVPGKTPGSYTMDHTAASYVFDRD
HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCCCCCEECCHHEEEEECCC
GKLRLFVRDGQGPGPWVHDLKLLVD
CCEEEEEECCCCCCCHHHHHEEECC
>Mature Secondary Structure
MLHSRFGRRARQGWMLACAFTAALLLAGCDNAPKFQNLDITGNTQFGSDFSLPDTAGKVH
CCCCHHHHHHHCCEEHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEE
TLADFKGRAVVMFFGYTHCPDVCPTTMAELSEALKQLGPDAAKRVQVLFVTVDPERDTPA
EEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCHH
LLGQYVPAFDPSFIGLRPADEAALKKVTKDFRVYYAKVPGKTPGSYTMDHTAASYVFDRD
HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCCCCCEECCHHEEEEECCC
GKLRLFVRDGQGPGPWVHDLKLLVD
CCEEEEEECCCCCCCHHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA