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The map label for this gene is sodB [H]

Identifier: 78067343

GI number: 78067343

Start: 2995050

End: 2995628

Strand: Reverse

Name: sodB [H]

Synonym: Bcep18194_A5874

Alternate gene names: 78067343

Gene position: 2995628-2995050 (Counterclockwise)

Preceding gene: 78067344

Following gene: 78067340

Centisome position: 81.09

GC content: 60.45

Gene sequence:

>579_bases
ATGGCTCATACGCTCCCGCCGCTCCCGTACGCTGAAGACGCACTCGCGCCGACCATCTCGCTCGAGACGATCCAGTACCA
CTACGGCAAGCACCATCAGGCTTATGTGACGAACCTGAACAATCTGATCCCGGGCACGGAATTCGAAAACCTGTCGCTGG
AAGAGATCGTGAAGAAGTCGTCGGGCGGCATCTTCAACAACGCCGCGCAAATCTGGAACCACACGTTCTTCTGGAACAGC
CTGTCGCCGAACGGCGGCGGCGCACCGACGGGCGCGCTGGGCGACGCGATCAACGCGAAGTGGGGTTCGTACGACGCATT
CAAGGAAGCGTTCACGAAGGCCGCAGTCGGCACGTTCGGTTCGGGCTGGGCATGGCTCGTGAAGAAGGCTGACGGTTCGC
TCGACATCGTGTCGACGAGCAACGCAGCCACGCCGCTGACGACCGCCGACAAGGCACTGCTGACGATCGACGTGTGGGAA
CACGCGTACTACATCGACTACCGCAACGCACGTCCGAAGTTCGTCGAAGCGTTCTGGAACATCGTGAACTGGGACTTCGC
AGCGAAGAACTTCGCGTAA

Upstream 100 bases:

>100_bases
AAATGGCCCGTGAGTTTGCGGGGTTATTCGTCCTCGCCTACAATCGGACGCTCGGCAGCATCCAACACAGCCTCCCTACA
TACTCAACGAAGGAATTGCC

Downstream 100 bases:

>100_bases
GGTCCGGCGCCTGCGCGCCGCTACGGCGCGCGGCACCCCGCAAAAAGAGCCCTCGAAACGAGGGCTTTTTTGTTTTCTGT
CGAGGTGGAACGTGCCCTGC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MAHTLPPLPYAEDALAPTISLETIQYHYGKHHQAYVTNLNNLIPGTEFENLSLEEIVKKSSGGIFNNAAQIWNHTFFWNS
LSPNGGGAPTGALGDAINAKWGSYDAFKEAFTKAAVGTFGSGWAWLVKKADGSLDIVSTSNAATPLTTADKALLTIDVWE
HAYYIDYRNARPKFVEAFWNIVNWDFAAKNFA

Sequences:

>Translated_192_residues
MAHTLPPLPYAEDALAPTISLETIQYHYGKHHQAYVTNLNNLIPGTEFENLSLEEIVKKSSGGIFNNAAQIWNHTFFWNS
LSPNGGGAPTGALGDAINAKWGSYDAFKEAFTKAAVGTFGSGWAWLVKKADGSLDIVSTSNAATPLTTADKALLTIDVWE
HAYYIDYRNARPKFVEAFWNIVNWDFAAKNFA
>Mature_191_residues
AHTLPPLPYAEDALAPTISLETIQYHYGKHHQAYVTNLNNLIPGTEFENLSLEEIVKKSSGGIFNNAAQIWNHTFFWNSL
SPNGGGAPTGALGDAINAKWGSYDAFKEAFTKAAVGTFGSGWAWLVKKADGSLDIVSTSNAATPLTTADKALLTIDVWEH
AYYIDYRNARPKFVEAFWNIVNWDFAAKNFA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=200, Percent_Identity=44.5, Blast_Score=162, Evalue=2e-40,
Organism=Homo sapiens, GI67782305, Length=200, Percent_Identity=44.5, Blast_Score=162, Evalue=2e-40,
Organism=Homo sapiens, GI67782309, Length=192, Percent_Identity=37.5, Blast_Score=119, Evalue=1e-27,
Organism=Escherichia coli, GI1787946, Length=192, Percent_Identity=68.75, Blast_Score=280, Evalue=3e-77,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=44.1747572815534, Blast_Score=162, Evalue=2e-41,
Organism=Caenorhabditis elegans, GI17506561, Length=200, Percent_Identity=38.5, Blast_Score=134, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17569479, Length=194, Percent_Identity=40.2061855670103, Blast_Score=131, Evalue=3e-31,
Organism=Saccharomyces cerevisiae, GI6321796, Length=208, Percent_Identity=36.0576923076923, Blast_Score=124, Evalue=1e-29,
Organism=Drosophila melanogaster, GI17136812, Length=194, Percent_Identity=41.7525773195876, Blast_Score=142, Evalue=1e-34,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21103; Mature: 20971

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHTLPPLPYAEDALAPTISLETIQYHYGKHHQAYVTNLNNLIPGTEFENLSLEEIVKKS
CCCCCCCCCCCCHHCCCEEEEEEEEECCCCCCHHEEHHHHHCCCCCCCCCCCHHHHHHHH
SGGIFNNAAQIWNHTFFWNSLSPNGGGAPTGALGDAINAKWGSYDAFKEAFTKAAVGTFG
CCCCCCCHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
SGWAWLVKKADGSLDIVSTSNAATPLTTADKALLTIDVWEHAYYIDYRNARPKFVEAFWN
CCEEEEEEECCCCEEEEECCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCHHHHHHHHH
IVNWDFAAKNFA
HHCCCCCCCCCC
>Mature Secondary Structure 
AHTLPPLPYAEDALAPTISLETIQYHYGKHHQAYVTNLNNLIPGTEFENLSLEEIVKKS
CCCCCCCCCCCHHCCCEEEEEEEEECCCCCCHHEEHHHHHCCCCCCCCCCCHHHHHHHH
SGGIFNNAAQIWNHTFFWNSLSPNGGGAPTGALGDAINAKWGSYDAFKEAFTKAAVGTFG
CCCCCCCHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
SGWAWLVKKADGSLDIVSTSNAATPLTTADKALLTIDVWEHAYYIDYRNARPKFVEAFWN
CCEEEEEEECCCCEEEEECCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCHHHHHHHHH
IVNWDFAAKNFA
HHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8181762; 12910271 [H]