| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is xseA
Identifier: 78067344
GI number: 78067344
Start: 2995856
End: 2997238
Strand: Reverse
Name: xseA
Synonym: Bcep18194_A5875
Alternate gene names: 78067344
Gene position: 2997238-2995856 (Counterclockwise)
Preceding gene: 78067350
Following gene: 78067343
Centisome position: 81.14
GC content: 72.09
Gene sequence:
>1383_bases ATGCCTTCCGACTCCCCATTTGCCGCACCGGGCGCGACCCGCGGCGGCGACGAAGTGATTCCCGTTTCGGCGCTCAATCG CGCGATTTCGACGATGCTCGAGCGCTCGTTTCCGCTGCTGTGGATTTCGGGCGAAGTGTCGAATTTCACGCGCGCCGCGA GCGGCCACTGGTATTTCTCGATCAAGGACCAGCAGGCGCAGATGCGCTGCGTGATGTTCCGCGGCCGCGCGCAATATGCG GAATTCACGCCGCGCGAAGGCGACCGGATCGAGGTGCGCGCGGTCGTCACGATGTACGAGCCGCGCGGCGAAGTGCAGCT CAACGTCGAGGCCGTGCGGCGCACCGGGCAGGGGCGCCTGTACGAGGCGTTCCTGCGGCTGAAGGCGCAGCTCGAGAGCG AGGGACTGTTCGCGCCCGAGCGCAAGCGGCCGCTGCCGGCCCACCCGCGCGCGATCGGCATCGTCACGTCGCTGCAGGCG GCTGCGCTGCGCGATGTGCTGACCACGCTCGCCCGCCGGGCGCCGCACATTCCGGTGATTGTCTATCCGGCGCCCGTGCA GGGCGCCGGTTCCGCCGACAAGCTCGTCACGGCCGTCGAGACCGCGAACGCGCGCCGCGAGGTCGACGTGCTGCTGGTCT GTCGCGGCGGCGGCTCGATCGAGGATCTGTGGTCGTTCAACGACGAGGCGCTGGCGCGCGCGATCGCGGCGAGCGAACTG CCGGTCGTCAGCGGCGTCGGGCACGAAACCGATTTCACGATTGCGGACTTCGCGGCCGACCTGCGTGCGCCGACGCCGAC CGGCGCGGCCGAGCTCGCGAGCCCGCAGCGCGCGCTGCTGCTGCGCGAGGTCGGCGAGCGCCAGCGTGCGCTCGCGCGCG GCATGGAACGCCGGCTCGAACAGCGCGCGCAGCAGCTCGACTGGCTCGCGCGCCGGCTGGTGAGCCCGGCCGAGCGGCTG CAGCGGCAGCGCACGCACGTCGAGCAGCTCGCGGTGCGGCTGGCGTCGGCGGCGTCGCGGCCGGTGCGCGACGCCCGCGC GCGGTTCGCGCTCGCGCAGCTGCGCTGGCAGCGCGCACGGCCTGATCCGTCGCAGGCGCGCCAGGCGCTCGCGGGGCTGT CGCAGCGTCTTGCGCTGGCCTTGCAGCGCCGTCACGAACGCGACACGGCTCGCGTGTCAGCCTGTGCGGCAAGGCTCGAG GTATTGAGCCCGCAACGTACGCTCGAGCGCGGCTATGCGGCGCTGATCGATGCACAGACGGGCCGCGCGGTGCGCACGCC GAACGCGCTGAAACCGCAGCGCCGCCTGACCGTGCATCTCGCGGAAGGATCGGCCGACGTGTCGCTCGCCGACGTGCAGC CGCGGCTGAGCGATACGATCTGA
Upstream 100 bases:
>100_bases AGTGTGGACACCTTCCGAACGTCATCGCGCATGTGCCCGGCGCTGGACGTCGCGCGCGTGTCGGACTATCGTGTCGCCGC CAGCATTCATCCGACCGTCC
Downstream 100 bases:
>100_bases CGTAACGGGTGCAAGCGGAGCGAAGGTTGCCGCAACGGACGCTTCGGGCGCGGGAACGGATGCTGCGCAGCGTCAGGTTC GTCCTGCCGGACGTTGCGCA
Product: exodeoxyribonuclease VII large subunit
Products: NA
Alternate protein names: Exodeoxyribonuclease VII large subunit; Exonuclease VII large subunit [H]
Number of amino acids: Translated: 460; Mature: 459
Protein sequence:
>460_residues MPSDSPFAAPGATRGGDEVIPVSALNRAISTMLERSFPLLWISGEVSNFTRAASGHWYFSIKDQQAQMRCVMFRGRAQYA EFTPREGDRIEVRAVVTMYEPRGEVQLNVEAVRRTGQGRLYEAFLRLKAQLESEGLFAPERKRPLPAHPRAIGIVTSLQA AALRDVLTTLARRAPHIPVIVYPAPVQGAGSADKLVTAVETANARREVDVLLVCRGGGSIEDLWSFNDEALARAIAASEL PVVSGVGHETDFTIADFAADLRAPTPTGAAELASPQRALLLREVGERQRALARGMERRLEQRAQQLDWLARRLVSPAERL QRQRTHVEQLAVRLASAASRPVRDARARFALAQLRWQRARPDPSQARQALAGLSQRLALALQRRHERDTARVSACAARLE VLSPQRTLERGYAALIDAQTGRAVRTPNALKPQRRLTVHLAEGSADVSLADVQPRLSDTI
Sequences:
>Translated_460_residues MPSDSPFAAPGATRGGDEVIPVSALNRAISTMLERSFPLLWISGEVSNFTRAASGHWYFSIKDQQAQMRCVMFRGRAQYA EFTPREGDRIEVRAVVTMYEPRGEVQLNVEAVRRTGQGRLYEAFLRLKAQLESEGLFAPERKRPLPAHPRAIGIVTSLQA AALRDVLTTLARRAPHIPVIVYPAPVQGAGSADKLVTAVETANARREVDVLLVCRGGGSIEDLWSFNDEALARAIAASEL PVVSGVGHETDFTIADFAADLRAPTPTGAAELASPQRALLLREVGERQRALARGMERRLEQRAQQLDWLARRLVSPAERL QRQRTHVEQLAVRLASAASRPVRDARARFALAQLRWQRARPDPSQARQALAGLSQRLALALQRRHERDTARVSACAARLE VLSPQRTLERGYAALIDAQTGRAVRTPNALKPQRRLTVHLAEGSADVSLADVQPRLSDTI >Mature_459_residues PSDSPFAAPGATRGGDEVIPVSALNRAISTMLERSFPLLWISGEVSNFTRAASGHWYFSIKDQQAQMRCVMFRGRAQYAE FTPREGDRIEVRAVVTMYEPRGEVQLNVEAVRRTGQGRLYEAFLRLKAQLESEGLFAPERKRPLPAHPRAIGIVTSLQAA ALRDVLTTLARRAPHIPVIVYPAPVQGAGSADKLVTAVETANARREVDVLLVCRGGGSIEDLWSFNDEALARAIAASELP VVSGVGHETDFTIADFAADLRAPTPTGAAELASPQRALLLREVGERQRALARGMERRLEQRAQQLDWLARRLVSPAERLQ RQRTHVEQLAVRLASAASRPVRDARARFALAQLRWQRARPDPSQARQALAGLSQRLALALQRRHERDTARVSACAARLEV LSPQRTLERGYAALIDAQTGRAVRTPNALKPQRRLTVHLAEGSADVSLADVQPRLSDTI
Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]
COG id: COG1570
COG function: function code L; Exonuclease VII, large subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xseA family [H]
Homologues:
Organism=Escherichia coli, GI1788856, Length=458, Percent_Identity=41.703056768559, Blast_Score=345, Evalue=3e-96,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003753 - InterPro: IPR020579 - InterPro: IPR004365 [H]
Pfam domain/function: PF02601 Exonuc_VII_L; PF01336 tRNA_anti [H]
EC number: =3.1.11.6 [H]
Molecular weight: Translated: 50650; Mature: 50519
Theoretical pI: Translated: 11.20; Mature: 11.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSDSPFAAPGATRGGDEVIPVSALNRAISTMLERSFPLLWISGEVSNFTRAASGHWYFS CCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCEEEE IKDQQAQMRCVMFRGRAQYAEFTPREGDRIEVRAVVTMYEPRGEVQLNVEAVRRTGQGRL ECCCHHHHHHHHHCCCHHHHCCCCCCCCEEEEEEEEEEECCCCCEEEEHHHHHHCCCCHH YEAFLRLKAQLESEGLFAPERKRPLPAHPRAIGIVTSLQAAALRDVLTTLARRAPHIPVI HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE VYPAPVQGAGSADKLVTAVETANARREVDVLLVCRGGGSIEDLWSFNDEALARAIAASEL EECCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHCCCHHHHHHHHHHHCC PVVSGVGHETDFTIADFAADLRAPTPTGAAELASPQRALLLREVGERQRALARGMERRLE CEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH QRAQQLDWLARRLVSPAERLQRQRTHVEQLAVRLASAASRPVRDARARFALAQLRWQRAR HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC PDPSQARQALAGLSQRLALALQRRHERDTARVSACAARLEVLSPQRTLERGYAALIDAQT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHEEEECCC GRAVRTPNALKPQRRLTVHLAEGSADVSLADVQPRLSDTI CCEECCCCCCCCCCEEEEEEECCCCCEEEECCCCHHHCCC >Mature Secondary Structure PSDSPFAAPGATRGGDEVIPVSALNRAISTMLERSFPLLWISGEVSNFTRAASGHWYFS CCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCEEEE IKDQQAQMRCVMFRGRAQYAEFTPREGDRIEVRAVVTMYEPRGEVQLNVEAVRRTGQGRL ECCCHHHHHHHHHCCCHHHHCCCCCCCCEEEEEEEEEEECCCCCEEEEHHHHHHCCCCHH YEAFLRLKAQLESEGLFAPERKRPLPAHPRAIGIVTSLQAAALRDVLTTLARRAPHIPVI HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE VYPAPVQGAGSADKLVTAVETANARREVDVLLVCRGGGSIEDLWSFNDEALARAIAASEL EECCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHCCCHHHHHHHHHHHCC PVVSGVGHETDFTIADFAADLRAPTPTGAAELASPQRALLLREVGERQRALARGMERRLE CEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH QRAQQLDWLARRLVSPAERLQRQRTHVEQLAVRLASAASRPVRDARARFALAQLRWQRAR HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC PDPSQARQALAGLSQRLALALQRRHERDTARVSACAARLEVLSPQRTLERGYAALIDAQT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHEEEECCC GRAVRTPNALKPQRRLTVHLAEGSADVSLADVQPRLSDTI CCEECCCCCCCCCCEEEEEEECCCCCEEEECCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA