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The map label for this gene is yfdE [H]

Identifier: 78067334

GI number: 78067334

Start: 2985290

End: 2986681

Strand: Reverse

Name: yfdE [H]

Synonym: Bcep18194_A5865

Alternate gene names: 78067334

Gene position: 2986681-2985290 (Counterclockwise)

Preceding gene: 78067335

Following gene: 78067332

Centisome position: 80.85

GC content: 72.34

Gene sequence:

>1392_bases
ATGACACCCGAACACGCGTTGACGCATCTGTGGCGGCTCGCACACGGCGACCCCGACGCGCTGGCCCGCGCGACCGTGAC
CGGGCAGGACCCGACGCTGCCGTCGACCTTCCGGGTCGGCACGCTGGCCGCGGCGACGATCGCGGCCGCCGGGCTCGCGG
CGGCGGAATGCCATCGGCTTCGCACGGGTGTCACGCAATCCGTCGACGTGTCGGTGCGCGATGCGCTCGTCGCGTTCCGC
AGTGAACGCTATCTGCGCGTGGACGATGGCCCGCCGCCGGAGTTGCGTCATCCGGTGACGGGCTTCTTCGAGACGGGCGA
CGGACGCTGGATCCAGTTGCACGCGAACTTCCCGCATCACCTGAACGGCATTCTCGACGTACTCGGCTGCGGTGCGCAGC
GGGGCGATGTCGCCACGGCGATCCGCGCGTGGGACGGCGCGGCACTCGATACTGAGCTGGCCGACGCCGGGCTGTGCGCC
GCATTGATCAGAACACCTGACGAGTGGGCGTCGCTCGAGCAGGCGCGCGCGATCGCGTCGCTGCCGCTGTTCGAGATCGA
GCGGATCGGCGATGCACCGGTCGAGCCGATCGGCCGAGGCGAAGCCGGCCAGCCGCTCACGGGTGTGCGCGTGCTCGATC
TCACGCGCATCATCGCGGGGCCGGTCGCGGGCCGCACGCTGGCATCGCACGGCGCGCAGACGCTGCTCGTCAACGGCCCG
CACCTGCCGAACATCGCGCCGCTCGTGATCGACAACGGGCGTGGCAAGCGTTCGACGTGGATCGACCTGCGCGACGCGGC
GGGGGGCGATGCGCTGCATGCGCTCGCACGCGATGCGGATGTGTTCCTGCAGTCGTACCGGCCCGGTGCGCTCGCGGCGC
GCGGTTTCGCGCCGCAAGCGCTGGCGGCGCGGCGGCCCGGCATCGTGTGCGTGTCGATATCCGCGTACGGGCACGTGGGG
CCGTGGGCGCAGCGGCGCGGCTTCGACAGCCTCGTACAGTCGGCGAGCGGGATCGCGTGGCAGGAGCAGCAGGCCGCGCA
CGCAGACGGGCCGCGCCACCTGCCGTGCCAGGCGCTCGATCATGCAACGGGTTATCTCGCGGCATTCGGCGCGATGATCG
CGCTCGCACGCCGGGCGCGCGAAGGGGGAAGCTGGCACGTGCGGCTGTCGCTCGCGCAGACGGGACGCTGGCTGCAGTCG
TTCGGCATCGTGCCGGACGGCCTGCAGGCCCCCGATTTCGCGCGCACCGACGTGCGCGACCGGATCGAACGCATCGCGTC
GCCGTTCGGCACGCTCGATGCGGTGCGGCCGGCCGAGCGGTTGTCGGCGACACCGCCGTCGCTTGCGCGCCCGCCCGTGC
CGCTCGGCACCGACGATGCGCGCTGGCTGTGA

Upstream 100 bases:

>100_bases
GAGACGACCGCGCGCGATGCGCTGATTCGTGCGATCAGGATTGCTCGCGGCTGTCGTGAATCCTAGACTCGATCTTGTCT
TCCCCACCGCCGGTCCCGCC

Downstream 100 bases:

>100_bases
GCGCCGGCGGCGCGTCTGGCGTTACTTGCGCAGTTCGACGACGAAGTCGTAGTAGTCGTTGCGGCAGTAGGTATCGGTCA
GTTCGATCGCGCGCTGGTCC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 463; Mature: 462

Protein sequence:

>463_residues
MTPEHALTHLWRLAHGDPDALARATVTGQDPTLPSTFRVGTLAAATIAAAGLAAAECHRLRTGVTQSVDVSVRDALVAFR
SERYLRVDDGPPPELRHPVTGFFETGDGRWIQLHANFPHHLNGILDVLGCGAQRGDVATAIRAWDGAALDTELADAGLCA
ALIRTPDEWASLEQARAIASLPLFEIERIGDAPVEPIGRGEAGQPLTGVRVLDLTRIIAGPVAGRTLASHGAQTLLVNGP
HLPNIAPLVIDNGRGKRSTWIDLRDAAGGDALHALARDADVFLQSYRPGALAARGFAPQALAARRPGIVCVSISAYGHVG
PWAQRRGFDSLVQSASGIAWQEQQAAHADGPRHLPCQALDHATGYLAAFGAMIALARRAREGGSWHVRLSLAQTGRWLQS
FGIVPDGLQAPDFARTDVRDRIERIASPFGTLDAVRPAERLSATPPSLARPPVPLGTDDARWL

Sequences:

>Translated_463_residues
MTPEHALTHLWRLAHGDPDALARATVTGQDPTLPSTFRVGTLAAATIAAAGLAAAECHRLRTGVTQSVDVSVRDALVAFR
SERYLRVDDGPPPELRHPVTGFFETGDGRWIQLHANFPHHLNGILDVLGCGAQRGDVATAIRAWDGAALDTELADAGLCA
ALIRTPDEWASLEQARAIASLPLFEIERIGDAPVEPIGRGEAGQPLTGVRVLDLTRIIAGPVAGRTLASHGAQTLLVNGP
HLPNIAPLVIDNGRGKRSTWIDLRDAAGGDALHALARDADVFLQSYRPGALAARGFAPQALAARRPGIVCVSISAYGHVG
PWAQRRGFDSLVQSASGIAWQEQQAAHADGPRHLPCQALDHATGYLAAFGAMIALARRAREGGSWHVRLSLAQTGRWLQS
FGIVPDGLQAPDFARTDVRDRIERIASPFGTLDAVRPAERLSATPPSLARPPVPLGTDDARWL
>Mature_462_residues
TPEHALTHLWRLAHGDPDALARATVTGQDPTLPSTFRVGTLAAATIAAAGLAAAECHRLRTGVTQSVDVSVRDALVAFRS
ERYLRVDDGPPPELRHPVTGFFETGDGRWIQLHANFPHHLNGILDVLGCGAQRGDVATAIRAWDGAALDTELADAGLCAA
LIRTPDEWASLEQARAIASLPLFEIERIGDAPVEPIGRGEAGQPLTGVRVLDLTRIIAGPVAGRTLASHGAQTLLVNGPH
LPNIAPLVIDNGRGKRSTWIDLRDAAGGDALHALARDADVFLQSYRPGALAARGFAPQALAARRPGIVCVSISAYGHVGP
WAQRRGFDSLVQSASGIAWQEQQAAHADGPRHLPCQALDHATGYLAAFGAMIALARRAREGGSWHVRLSLAQTGRWLQSF
GIVPDGLQAPDFARTDVRDRIERIASPFGTLDAVRPAERLSATPPSLARPPVPLGTDDARWL

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=206, Percent_Identity=31.5533980582524, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI300863124, Length=206, Percent_Identity=31.5533980582524, Blast_Score=97, Evalue=4e-20,
Organism=Homo sapiens, GI300863126, Length=147, Percent_Identity=32.6530612244898, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI42794625, Length=199, Percent_Identity=27.6381909547739, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI266456254, Length=199, Percent_Identity=27.6381909547739, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI266458397, Length=199, Percent_Identity=27.6381909547739, Blast_Score=70, Evalue=6e-12,
Organism=Homo sapiens, GI266458393, Length=199, Percent_Identity=27.6381909547739, Blast_Score=69, Evalue=9e-12,
Organism=Escherichia coli, GI87082093, Length=205, Percent_Identity=24.390243902439, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1788717, Length=200, Percent_Identity=27, Blast_Score=76, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=200, Percent_Identity=31, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI32564160, Length=198, Percent_Identity=28.7878787878788, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24648431, Length=192, Percent_Identity=33.8541666666667, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24585488, Length=207, Percent_Identity=27.536231884058, Blast_Score=75, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 49229; Mature: 49098

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPEHALTHLWRLAHGDPDALARATVTGQDPTLPSTFRVGTLAAATIAAAGLAAAECHRL
CCCHHHHHHHHHHHCCCHHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RTGVTQSVDVSVRDALVAFRSERYLRVDDGPPPELRHPVTGFFETGDGRWIQLHANFPHH
HHCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEECCCCCEEEEECCCCHH
LNGILDVLGCGAQRGDVATAIRAWDGAALDTELADAGLCAALIRTPDEWASLEQARAIAS
HHHHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LPLFEIERIGDAPVEPIGRGEAGQPLTGVRVLDLTRIIAGPVAGRTLASHGAQTLLVNGP
CCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCEEEECCC
HLPNIAPLVIDNGRGKRSTWIDLRDAAGGDALHALARDADVFLQSYRPGALAARGFAPQA
CCCCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCHH
LAARRPGIVCVSISAYGHVGPWAQRRGFDSLVQSASGIAWQEQQAAHADGPRHLPCQALD
HHHCCCCEEEEEEECCCCCCCHHHHCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCHHHHH
HATGYLAAFGAMIALARRAREGGSWHVRLSLAQTGRWLQSFGIVPDGLQAPDFARTDVRD
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
RIERIASPFGTLDAVRPAERLSATPPSLARPPVPLGTDDARWL
HHHHHHCCCCCHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TPEHALTHLWRLAHGDPDALARATVTGQDPTLPSTFRVGTLAAATIAAAGLAAAECHRL
CCHHHHHHHHHHHCCCHHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RTGVTQSVDVSVRDALVAFRSERYLRVDDGPPPELRHPVTGFFETGDGRWIQLHANFPHH
HHCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEECCCCCEEEEECCCCHH
LNGILDVLGCGAQRGDVATAIRAWDGAALDTELADAGLCAALIRTPDEWASLEQARAIAS
HHHHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LPLFEIERIGDAPVEPIGRGEAGQPLTGVRVLDLTRIIAGPVAGRTLASHGAQTLLVNGP
CCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCEEEECCC
HLPNIAPLVIDNGRGKRSTWIDLRDAAGGDALHALARDADVFLQSYRPGALAARGFAPQA
CCCCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCHH
LAARRPGIVCVSISAYGHVGPWAQRRGFDSLVQSASGIAWQEQQAAHADGPRHLPCQALD
HHHCCCCEEEEEEECCCCCCCHHHHCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCHHHHH
HATGYLAAFGAMIALARRAREGGSWHVRLSLAQTGRWLQSFGIVPDGLQAPDFARTDVRD
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
RIERIASPFGTLDAVRPAERLSATPPSLARPPVPLGTDDARWL
HHHHHHCCCCCHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]