| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is 78067225
Identifier: 78067225
GI number: 78067225
Start: 2865455
End: 2866456
Strand: Reverse
Name: 78067225
Synonym: Bcep18194_A5756
Alternate gene names: NA
Gene position: 2866456-2865455 (Counterclockwise)
Preceding gene: 78067231
Following gene: 78067223
Centisome position: 77.59
GC content: 67.86
Gene sequence:
>1002_bases ATGGCGGATGAGCGATTCGACACGGCGCGCGGCTGGCTGCGCATGCTGTCGTGCCTGCTGCTGGTCGTGGCGCTCGGCGC GCCGTGGGCGTCGGCACGCGCGGATGCCTGTTCGGTCACGCCACCGGCGCCGAGCTTCGGCTCCGTCAGCCCGATCCGGC TGCTGGCCGTCACGACCACCAGCACGATGACCGTCAACTGCACGTGGGATGTGCTGAGCCTGAACACGGGCGTGCTCGTC TGCGTGAACCTCGGCGGCACGAGCCCGCGCTACCTGAGCAACGGGACGAACCAGATGCAGTACGACCTGTACCAGGACTC CGGTTACTCGCAGGCGTGGGGTTCCGTCAGCGCCGGCACCACGCCGATCTCCGTGACGTTGCAGAAACCGTTGCTCGGCA CCAGCGCGAGCGCGAATATCACCATCTATGGCCGCGTCACGGCCAACCAGCCGACCGTGCCGACCGTGAACAACAGCAGC ACCGTCTACACCCAGAGCTTCAGCGGCAACCAGGCGACCTACAGCCAGAGCTTTTCGCTGCTCAGCATCCTGCCGACGCT GACCTGCGCGGCGCAGTCGGCGGCCGGCACGGTGAGCTTCTCCGCCACGGCCACGGTCGCCAACGACTGCATCATCACCG CGACCGGCGTCGCGTTTCCGGCCACCGGCGTATTGACGTCTCCGCTGGCAGCGGCCGGGTCGATCAATGCGCGCTGCACG AACGGCGACGCGTTCCAGATTGCGCTGAACGGCGGCAGCAGCGGCAACGTCGCCGCACGCACCATGTCGCGTACGGGCGG CGGCGGGTCGGTCGGCTATCAGCTTTACGCGGACGGCGGCTATACGACGCCATGGGGCGACGGTACCGGCGGCACGTCGA TGGCGACGGGGTCGGGCAGCGGATTCAGCCAGACGATACCCGTGTACGGGCGCGTGCCCGCGCAGACAACCCCCGCGCCG GGCAACTACAGCGATTCGATTACTGCAACGATCAGCTTCTGA
Upstream 100 bases:
>100_bases AAGAATCGGCGCGAACGACGCAGTACGCGGCCGGCTACCATCGAGGGGCGCGTGGCCTGGCGACGGTTGTCGCGGGGCGA GCGTGCTTACGGGGAAAACC
Downstream 100 bases:
>100_bases GTTGCGTCAGTCGCGCACCAGCACCACCAGCTTCAGGTCTTCGCGGTGCGCGGGCTTCAGCGTGATCTGCTGGTACACGA GGCGGCCGTCGGCCGGATGG
Product: secreted pili protein involved in motility and biofilm formation
Products: NA
Alternate protein names: Spore Coat Protein U Domain-Containing; Spore Coat U Domain Protein; Lipoprotein; Lipoprotein Signal Peptide; Spore Coat Protein U Domain Protein; Spore Coat Protein U; Signal Peptide Protein; Spore Coat Family Protein; Secreted Protein-Like
Number of amino acids: Translated: 333; Mature: 332
Protein sequence:
>333_residues MADERFDTARGWLRMLSCLLLVVALGAPWASARADACSVTPPAPSFGSVSPIRLLAVTTTSTMTVNCTWDVLSLNTGVLV CVNLGGTSPRYLSNGTNQMQYDLYQDSGYSQAWGSVSAGTTPISVTLQKPLLGTSASANITIYGRVTANQPTVPTVNNSS TVYTQSFSGNQATYSQSFSLLSILPTLTCAAQSAAGTVSFSATATVANDCIITATGVAFPATGVLTSPLAAAGSINARCT NGDAFQIALNGGSSGNVAARTMSRTGGGGSVGYQLYADGGYTTPWGDGTGGTSMATGSGSGFSQTIPVYGRVPAQTTPAP GNYSDSITATISF
Sequences:
>Translated_333_residues MADERFDTARGWLRMLSCLLLVVALGAPWASARADACSVTPPAPSFGSVSPIRLLAVTTTSTMTVNCTWDVLSLNTGVLV CVNLGGTSPRYLSNGTNQMQYDLYQDSGYSQAWGSVSAGTTPISVTLQKPLLGTSASANITIYGRVTANQPTVPTVNNSS TVYTQSFSGNQATYSQSFSLLSILPTLTCAAQSAAGTVSFSATATVANDCIITATGVAFPATGVLTSPLAAAGSINARCT NGDAFQIALNGGSSGNVAARTMSRTGGGGSVGYQLYADGGYTTPWGDGTGGTSMATGSGSGFSQTIPVYGRVPAQTTPAP GNYSDSITATISF >Mature_332_residues ADERFDTARGWLRMLSCLLLVVALGAPWASARADACSVTPPAPSFGSVSPIRLLAVTTTSTMTVNCTWDVLSLNTGVLVC VNLGGTSPRYLSNGTNQMQYDLYQDSGYSQAWGSVSAGTTPISVTLQKPLLGTSASANITIYGRVTANQPTVPTVNNSST VYTQSFSGNQATYSQSFSLLSILPTLTCAAQSAAGTVSFSATATVANDCIITATGVAFPATGVLTSPLAAAGSINARCTN GDAFQIALNGGSSGNVAARTMSRTGGGGSVGYQLYADGGYTTPWGDGTGGTSMATGSGSGFSQTIPVYGRVPAQTTPAPG NYSDSITATISF
Specific function: Unknown
COG id: COG5430
COG function: function code S; Uncharacterized secreted protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33818; Mature: 33687
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADERFDTARGWLRMLSCLLLVVALGAPWASARADACSVTPPAPSFGSVSPIRLLAVTTT CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC STMTVNCTWDVLSLNTGVLVCVNLGGTSPRYLSNGTNQMQYDLYQDSGYSQAWGSVSAGT CEEEEEEEEEEEECCCCEEEEEECCCCCCHHHCCCCCCEEEEEEECCCCCCCCCCCCCCC TPISVTLQKPLLGTSASANITIYGRVTANQPTVPTVNNSSTVYTQSFSGNQATYSQSFSL CEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCEECCCCEEEEEECCCCCCCHHHCHHH LSILPTLTCAAQSAAGTVSFSATATVANDCIITATGVAFPATGVLTSPLAAAGSINARCT HHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEECCCCCCCCCHHHCCHHHCCCCCEEEC NGDAFQIALNGGSSGNVAARTMSRTGGGGSVGYQLYADGGYTTPWGDGTGGTSMATGSGS CCCEEEEEECCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCEECCCCC GFSQTIPVYGRVPAQTTPAPGNYSDSITATISF CCCEECCEEECCCCCCCCCCCCCCCCEEEEEEC >Mature Secondary Structure ADERFDTARGWLRMLSCLLLVVALGAPWASARADACSVTPPAPSFGSVSPIRLLAVTTT CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC STMTVNCTWDVLSLNTGVLVCVNLGGTSPRYLSNGTNQMQYDLYQDSGYSQAWGSVSAGT CEEEEEEEEEEEECCCCEEEEEECCCCCCHHHCCCCCCEEEEEEECCCCCCCCCCCCCCC TPISVTLQKPLLGTSASANITIYGRVTANQPTVPTVNNSSTVYTQSFSGNQATYSQSFSL CEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCEECCCCEEEEEECCCCCCCHHHCHHH LSILPTLTCAAQSAAGTVSFSATATVANDCIITATGVAFPATGVLTSPLAAAGSINARCT HHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEECCCCCCCCCHHHCCHHHCCCCCEEEC NGDAFQIALNGGSSGNVAARTMSRTGGGGSVGYQLYADGGYTTPWGDGTGGTSMATGSGS CCCEEEEEECCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCEECCCCC GFSQTIPVYGRVPAQTTPAPGNYSDSITATISF CCCEECCEEECCCCCCCCCCCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA