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The map label for this gene is acdA [H]

Identifier: 78067029

GI number: 78067029

Start: 2657126

End: 2658322

Strand: Reverse

Name: acdA [H]

Synonym: Bcep18194_A5560

Alternate gene names: 78067029

Gene position: 2658322-2657126 (Counterclockwise)

Preceding gene: 78067030

Following gene: 78067028

Centisome position: 71.96

GC content: 65.0

Gene sequence:

>1197_bases
ATGGATCTGGATTATTCCCCCGCCGACGACGCGTTCCGCGTCGACGTCCGCGCCTGGCTTGAGGCCAACCTGCCTCACGC
ACTGCGCGCCAAAGTACTCGATCACAAACGACTCGACCGCGAAGATTTCGCGAGCTGGCACCGGATTCTCGGCCAGCGCG
GCTGGTCTGCGCCCGCGTGGCCGGTTGAATACGGCGGCCCGGGCTGGAACGCGACGCAACGACACATCTGGGACGAGGAG
TGCGCGCGGATCGGCGCGCCGACCGTGCTGCCGTTCGGTGTATCGATGGTCGCGCCCGTGTTGATGAAATACGGCAGCGA
AGCGCAGAAACGTCATTATCTGCCGCGCATTCTCGATGGCACCGACTGGTGGTGTCAGGGCTACTCGGAGCCGGGTTCGG
GATCCGACCTCGCCTCGTTGCGCACGCGCGCCGAGCGCCAGGGCGACCACTACGTCGTCAATGGCCAGAAGACCTGGACG
ACGCTCGGCCAGTACGCCGACATGATGTTCTGCCTCGTACGCACCGATCCGGCCGCGAAGAAACAGGAGGGTATCTCGTT
CCTGCTGATCGACATGAAGACGCCCGGTATCACGGTGCGCCCGATCGTCATGCTCGACGAGGACCACGAGGTCAACGAGG
TGTTCTTCGAGGACGTGAAGGTGCCGGTCGAGAACCTCGTCGGCGACGAGAACCGCGGCTGGACCTACGCGAAATACCTG
CTTGGCCATGAGCGCACCGGTATCGCGCGCGTCGGCGCGTCGAAGCGCGAGCTCGCATTCCTGAAGCGCGTCGCGTCGAA
CCAGCGCAAGAACGGCAAGCCGTTGCTCGCCGATCCCGTGTTCGCCGCGAAGGTCGCGGCGCTCGAGGTCGAGCTGATGG
CGCTCGAGGTGACGGTGCTGCGCGTCGTCAGCCGCGAGACGAGCGGCAAGGGGCCGGGCCCCGAGGCGTCGATGCTGAAG
ATCAAGGGCACGGAAGTGCAGCAGGCACTCACCGAGCTGATGGTCGATGCGATCGGCCCGCTCGCTGCACCGTTCGACGT
ACCGTTCCTCGACGGGCAGCGCGAGCACAGCATCGCGGGCGACGACGATGCGGCGCCGCTTGCCGCGTACTACTTCAATT
ACCGGAAGACGTCGATCTACGGCGGCTCGAACGAGATCCAGAAGAACATCATCGCGCAGATGATTCTGGGGCTGTGA

Upstream 100 bases:

>100_bases
GCCGCTGCCGATTCCTGCCGCGCTGAAAGAACCGCTGCAATGACGTATGCAGTGAGTCCTTGCCCGGTCGGACGACGGCC
GCGGCGAGGAGACACTGCGC

Downstream 100 bases:

>100_bases
TCAGGGAACGGAGACAACCATGGATTTCAGCTTTACCGATGAGCAGCAGCAGTTTGCCGATGCGCTGCGCCGTTATCTCG
GCGAGCAATACGGCTTCGAA

Product: Acyl-CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 398

Protein sequence:

>398_residues
MDLDYSPADDAFRVDVRAWLEANLPHALRAKVLDHKRLDREDFASWHRILGQRGWSAPAWPVEYGGPGWNATQRHIWDEE
CARIGAPTVLPFGVSMVAPVLMKYGSEAQKRHYLPRILDGTDWWCQGYSEPGSGSDLASLRTRAERQGDHYVVNGQKTWT
TLGQYADMMFCLVRTDPAAKKQEGISFLLIDMKTPGITVRPIVMLDEDHEVNEVFFEDVKVPVENLVGDENRGWTYAKYL
LGHERTGIARVGASKRELAFLKRVASNQRKNGKPLLADPVFAAKVAALEVELMALEVTVLRVVSRETSGKGPGPEASMLK
IKGTEVQQALTELMVDAIGPLAAPFDVPFLDGQREHSIAGDDDAAPLAAYYFNYRKTSIYGGSNEIQKNIIAQMILGL

Sequences:

>Translated_398_residues
MDLDYSPADDAFRVDVRAWLEANLPHALRAKVLDHKRLDREDFASWHRILGQRGWSAPAWPVEYGGPGWNATQRHIWDEE
CARIGAPTVLPFGVSMVAPVLMKYGSEAQKRHYLPRILDGTDWWCQGYSEPGSGSDLASLRTRAERQGDHYVVNGQKTWT
TLGQYADMMFCLVRTDPAAKKQEGISFLLIDMKTPGITVRPIVMLDEDHEVNEVFFEDVKVPVENLVGDENRGWTYAKYL
LGHERTGIARVGASKRELAFLKRVASNQRKNGKPLLADPVFAAKVAALEVELMALEVTVLRVVSRETSGKGPGPEASMLK
IKGTEVQQALTELMVDAIGPLAAPFDVPFLDGQREHSIAGDDDAAPLAAYYFNYRKTSIYGGSNEIQKNIIAQMILGL
>Mature_398_residues
MDLDYSPADDAFRVDVRAWLEANLPHALRAKVLDHKRLDREDFASWHRILGQRGWSAPAWPVEYGGPGWNATQRHIWDEE
CARIGAPTVLPFGVSMVAPVLMKYGSEAQKRHYLPRILDGTDWWCQGYSEPGSGSDLASLRTRAERQGDHYVVNGQKTWT
TLGQYADMMFCLVRTDPAAKKQEGISFLLIDMKTPGITVRPIVMLDEDHEVNEVFFEDVKVPVENLVGDENRGWTYAKYL
LGHERTGIARVGASKRELAFLKRVASNQRKNGKPLLADPVFAAKVAALEVELMALEVTVLRVVSRETSGKGPGPEASMLK
IKGTEVQQALTELMVDAIGPLAAPFDVPFLDGQREHSIAGDDDAAPLAAYYFNYRKTSIYGGSNEIQKNIIAQMILGL

Specific function: Involved in the degradation of long-chain fatty acids [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4501857, Length=402, Percent_Identity=26.3681592039801, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI4557233, Length=368, Percent_Identity=27.445652173913, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI226958414, Length=201, Percent_Identity=33.8308457711443, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI226958412, Length=244, Percent_Identity=30.7377049180328, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI4501859, Length=353, Percent_Identity=27.4787535410765, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI4557231, Length=341, Percent_Identity=26.3929618768328, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI187960098, Length=341, Percent_Identity=26.3929618768328, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI211971008, Length=351, Percent_Identity=27.0655270655271, Blast_Score=106, Evalue=5e-23,
Organism=Homo sapiens, GI48976061, Length=351, Percent_Identity=27.0655270655271, Blast_Score=106, Evalue=5e-23,
Organism=Homo sapiens, GI21361497, Length=336, Percent_Identity=27.3809523809524, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI7656849, Length=257, Percent_Identity=27.2373540856031, Blast_Score=97, Evalue=4e-20,
Organism=Homo sapiens, GI4557235, Length=294, Percent_Identity=28.9115646258503, Blast_Score=92, Evalue=9e-19,
Organism=Homo sapiens, GI76496475, Length=294, Percent_Identity=28.9115646258503, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI38505218, Length=310, Percent_Identity=26.7741935483871, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI4503943, Length=292, Percent_Identity=26.7123287671233, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI7669494, Length=292, Percent_Identity=26.7123287671233, Blast_Score=75, Evalue=8e-14,
Organism=Escherichia coli, GI87081958, Length=407, Percent_Identity=22.8501228501229, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1786223, Length=401, Percent_Identity=21.9451371571072, Blast_Score=82, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17538396, Length=206, Percent_Identity=32.5242718446602, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17508101, Length=355, Percent_Identity=26.1971830985915, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17569725, Length=356, Percent_Identity=26.685393258427, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17506239, Length=351, Percent_Identity=26.2108262108262, Blast_Score=105, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17551932, Length=212, Percent_Identity=31.6037735849057, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI71985184, Length=210, Percent_Identity=34.2857142857143, Blast_Score=101, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17534899, Length=222, Percent_Identity=31.5315315315315, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17570075, Length=352, Percent_Identity=24.1477272727273, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71985192, Length=210, Percent_Identity=34.2857142857143, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI32563615, Length=198, Percent_Identity=31.8181818181818, Blast_Score=96, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17505929, Length=351, Percent_Identity=25.3561253561254, Blast_Score=92, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17533517, Length=257, Percent_Identity=28.4046692607004, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI71990804, Length=206, Percent_Identity=27.6699029126214, Blast_Score=89, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17534353, Length=265, Percent_Identity=25.2830188679245, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71982178, Length=195, Percent_Identity=26.6666666666667, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562446, Length=350, Percent_Identity=23.7142857142857, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21356377, Length=368, Percent_Identity=26.6304347826087, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI281363737, Length=282, Percent_Identity=29.7872340425532, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24646207, Length=365, Percent_Identity=27.3972602739726, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI21355753, Length=212, Percent_Identity=33.0188679245283, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24666513, Length=343, Percent_Identity=26.8221574344023, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI24660351, Length=214, Percent_Identity=31.7757009345794, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI19920834, Length=401, Percent_Identity=24.6882793017456, Blast_Score=82, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 44296; Mature: 44296

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLDYSPADDAFRVDVRAWLEANLPHALRAKVLDHKRLDREDFASWHRILGQRGWSAPAW
CCCCCCCCCCCEEEHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCC
PVEYGGPGWNATQRHIWDEECARIGAPTVLPFGVSMVAPVLMKYGSEAQKRHYLPRILDG
CCCCCCCCCCCHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCHHCCC
TDWWCQGYSEPGSGSDLASLRTRAERQGDHYVVNGQKTWTTLGQYADMMFCLVRTDPAAK
CCHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHEEEEECCCCHH
KQEGISFLLIDMKTPGITVRPIVMLDEDHEVNEVFFEDVKVPVENLVGDENRGWTYAKYL
HHCCCEEEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHCCCHHHHCCCCCCCCCHHHHH
LGHERTGIARVGASKRELAFLKRVASNQRKNGKPLLADPVFAAKVAALEVELMALEVTVL
HCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHH
RVVSRETSGKGPGPEASMLKIKGTEVQQALTELMVDAIGPLAAPFDVPFLDGQREHSIAG
HHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
DDDAAPLAAYYFNYRKTSIYGGSNEIQKNIIAQMILGL
CCCCCHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDLDYSPADDAFRVDVRAWLEANLPHALRAKVLDHKRLDREDFASWHRILGQRGWSAPAW
CCCCCCCCCCCEEEHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCC
PVEYGGPGWNATQRHIWDEECARIGAPTVLPFGVSMVAPVLMKYGSEAQKRHYLPRILDG
CCCCCCCCCCCHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCHHCCC
TDWWCQGYSEPGSGSDLASLRTRAERQGDHYVVNGQKTWTTLGQYADMMFCLVRTDPAAK
CCHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHEEEEECCCCHH
KQEGISFLLIDMKTPGITVRPIVMLDEDHEVNEVFFEDVKVPVENLVGDENRGWTYAKYL
HHCCCEEEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHCCCHHHHCCCCCCCCCHHHHH
LGHERTGIARVGASKRELAFLKRVASNQRKNGKPLLADPVFAAKVAALEVELMALEVTVL
HCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHH
RVVSRETSGKGPGPEASMLKIKGTEVQQALTELMVDAIGPLAAPFDVPFLDGQREHSIAG
HHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
DDDAAPLAAYYFNYRKTSIYGGSNEIQKNIIAQMILGL
CCCCCHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]