Click here to switch to the map view.

The map label for this gene is yccM [C]

Identifier: 78067003

GI number: 78067003

Start: 2627347

End: 2628744

Strand: Reverse

Name: yccM [C]

Synonym: Bcep18194_A5534

Alternate gene names: 78067003

Gene position: 2628744-2627347 (Counterclockwise)

Preceding gene: 78067004

Following gene: 78066999

Centisome position: 71.16

GC content: 66.74

Gene sequence:

>1398_bases
ATGAGCGTTGTCGCCGCAGCCAAGCAGGGCTGGCTCGCGCAGGCCGGCCAGTGGATGCAGCGCCACGGTGCGCTGATCCG
CGGCATCCAGTGGGCCGTCGTCGCCGTCTATGCGTTCCTGATCATCGTGCCGGCGGTGCTGCCGCTGCCGGACGACACCG
CGCACCTGTGGAGCAACCTCACGCTGATCGCGCAATTCACGTTCTGGGGCATCTGGTGGCCGTTCGTGCTGCTGTCGATG
GTGATGCTCGGCCGTGTCTGGTGCGGCGTGCTGTGTCCGGAAGGGGCGCTTACCGAATTCGCGAGCAAGTTCGGCCGCGG
CGGTCCGATTCCACGCTGGATCCGGTGGGGCGGCTGGCCGTTCGTTGCGTTCGGGCTCACGACGATCTACGGGCAGATGG
TGAGCGTGTACCAGTACCCGCTCGCGGTGCTGTTCGTGCTCGGCGGCTCGACCGTCGGCGCGATCGTGATCGGCGTGCTG
TACGGCCGCGAGAAGCGCGTGTGGTGCAAGTACCTGTGTCCGGTCAACGGCGTGTTCGGGCTGCTCGCGCGGCTCGCGCC
GATGCGCTACAAGGTCGATGAGGATGCATGGCGCCGTTCGTACAAGAACGGCGAGCATGGCCATCGCGTGATTCCGATCA
ACTGCGCGCCGCTCGTGCCCTTGCGCAACATGAAGGGCGCGGCGGACTGCCACATGTGCGGCCGCTGCAGCGGGCACCGC
GATGCGATCTCGCTGTCGCTGCGCTCGCCGTCCGACGAAGTCGTGAACCTCGGCGCGCAGCAGGCGAACCCGTGGGACAC
CGCGCTGATCCTTTACGGTCTGCTTGGCGTCGCGATCGGCGCGTTCCACTGGACCGTCAGCCCGTGGTTCGTGCAGATCA
AGCAATGGCTCGCGGGCTGGCTGATCGACCATGACATCACGTGGCCGCTCGAGACCAACGCGCCTTGGTTCCTGCTCACG
CACTATCCGGATCGCAACGACGTGTTCTCGTGGCTCGACGGCGGGCTGGTCATCAGCTACATCGTCGGTACGGGGCTCGT
GTACGGCACGGCGCTGCTGGTGCTGCTGGCCGGCGCCACGCTGATGCTCGGCCGCTTCGATCGCGTGCGGCTGCATCATC
TTGCGCAGGCGTTGATTCCGATTGCAGGCGCGGGTGTGTTCCTTGGCCTGTCGGCCACGACACTGTCGCTGCTGCGTGCC
GAGCATGTACCGCTCGGCTGGGCGACCGATGTGCGCATCGCGATCCTGGTCGGCGCCAACGCATGGAGTGCGTGGCTCGC
ATGGAAAGTGACGGGGCGCTATGCGGGCTGGCTGCGCCGGCTTGCGGCATTCGCGTGGTTCGCCGCCGGGCTTGCCGTCA
TCGACAGCGCATGGTGGTTGATGTTCTGGGGTTTCTGA

Upstream 100 bases:

>100_bases
CACTGACCAACCTGGTTGCCTACGCGGTGTACTGGGCGGTGGTCTGGCTGCTGATGAAGCGTGCGAGCCGTCGTCCGGCC
GTCGCGGCAGGTCGCGCGGC

Downstream 100 bases:

>100_bases
AGCGGATCGCATACCGCTTCGGCGGTCACGCAGCGACGCGATAACGAACCCGGGCGGCGTGCTTCACGCATTGGCCGCCT
AAATAAAAAAAGCGACACGT

Product: polyferredoxin-like

Products: NA

Alternate protein names: Nitrogen Fixation Protein VnfA; Polyferredoxin; Regulatory Protein; Polyferredoxin-Like Protein; Polyferredoxin-Like; Sigma-54 Interaction Domain Family; Ferredoxin; Polyferredoxin Protein; Nitrogen Regulatory Protein; Transcriptional Regulator

Number of amino acids: Translated: 465; Mature: 464

Protein sequence:

>465_residues
MSVVAAAKQGWLAQAGQWMQRHGALIRGIQWAVVAVYAFLIIVPAVLPLPDDTAHLWSNLTLIAQFTFWGIWWPFVLLSM
VMLGRVWCGVLCPEGALTEFASKFGRGGPIPRWIRWGGWPFVAFGLTTIYGQMVSVYQYPLAVLFVLGGSTVGAIVIGVL
YGREKRVWCKYLCPVNGVFGLLARLAPMRYKVDEDAWRRSYKNGEHGHRVIPINCAPLVPLRNMKGAADCHMCGRCSGHR
DAISLSLRSPSDEVVNLGAQQANPWDTALILYGLLGVAIGAFHWTVSPWFVQIKQWLAGWLIDHDITWPLETNAPWFLLT
HYPDRNDVFSWLDGGLVISYIVGTGLVYGTALLVLLAGATLMLGRFDRVRLHHLAQALIPIAGAGVFLGLSATTLSLLRA
EHVPLGWATDVRIAILVGANAWSAWLAWKVTGRYAGWLRRLAAFAWFAAGLAVIDSAWWLMFWGF

Sequences:

>Translated_465_residues
MSVVAAAKQGWLAQAGQWMQRHGALIRGIQWAVVAVYAFLIIVPAVLPLPDDTAHLWSNLTLIAQFTFWGIWWPFVLLSM
VMLGRVWCGVLCPEGALTEFASKFGRGGPIPRWIRWGGWPFVAFGLTTIYGQMVSVYQYPLAVLFVLGGSTVGAIVIGVL
YGREKRVWCKYLCPVNGVFGLLARLAPMRYKVDEDAWRRSYKNGEHGHRVIPINCAPLVPLRNMKGAADCHMCGRCSGHR
DAISLSLRSPSDEVVNLGAQQANPWDTALILYGLLGVAIGAFHWTVSPWFVQIKQWLAGWLIDHDITWPLETNAPWFLLT
HYPDRNDVFSWLDGGLVISYIVGTGLVYGTALLVLLAGATLMLGRFDRVRLHHLAQALIPIAGAGVFLGLSATTLSLLRA
EHVPLGWATDVRIAILVGANAWSAWLAWKVTGRYAGWLRRLAAFAWFAAGLAVIDSAWWLMFWGF
>Mature_464_residues
SVVAAAKQGWLAQAGQWMQRHGALIRGIQWAVVAVYAFLIIVPAVLPLPDDTAHLWSNLTLIAQFTFWGIWWPFVLLSMV
MLGRVWCGVLCPEGALTEFASKFGRGGPIPRWIRWGGWPFVAFGLTTIYGQMVSVYQYPLAVLFVLGGSTVGAIVIGVLY
GREKRVWCKYLCPVNGVFGLLARLAPMRYKVDEDAWRRSYKNGEHGHRVIPINCAPLVPLRNMKGAADCHMCGRCSGHRD
AISLSLRSPSDEVVNLGAQQANPWDTALILYGLLGVAIGAFHWTVSPWFVQIKQWLAGWLIDHDITWPLETNAPWFLLTH
YPDRNDVFSWLDGGLVISYIVGTGLVYGTALLVLLAGATLMLGRFDRVRLHHLAQALIPIAGAGVFLGLSATTLSLLRAE
HVPLGWATDVRIAILVGANAWSAWLAWKVTGRYAGWLRRLAAFAWFAAGLAVIDSAWWLMFWGF

Specific function: Unknown

COG id: COG0348

COG function: function code C; Polyferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51532; Mature: 51401

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure 
SVVAAAKQGWLAQAGQWMQRHGALIRGIQWAVVAVYAFLIIVPAVLPLPDDTAHLWSNL
CCCHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCH
TLIAQFTFWGIWWPFVLLSMVMLGRVWCGVLCPEGALTEFASKFGRGGPIPRWIRWGGWP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHCCCCH
FVAFGLTTIYGQMVSVYQYPLAVLFVLGGSTVGAIVIGVLYGREKRVWCKYLCPVNGVFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHECCCCHHHHH
LLARLAPMRYKVDEDAWRRSYKNGEHGHRVIPINCAPLVPLRNMKGAADCHMCGRCSGHR
HHHHHCCCCEECCHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCC
DAISLSLRSPSDEVVNLGAQQANPWDTALILYGLLGVAIGAFHWTVSPWFVQIKQWLAGW
CEEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LIDHDITWPLETNAPWFLLTHYPDRNDVFSWLDGGLVISYIVGTGLVYGTALLVLLAGAT
HCCCCCCCCEECCCCEEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LMLGRFDRVRLHHLAQALIPIAGAGVFLGLSATTLSLLRAEHVPLGWATDVRIAILVGAN
HHHHCHHHHHHHHHHHHHHHHHCCHHHEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC
AWSAWLAWKVTGRYAGWLRRLAAFAWFAAGLAVIDSAWWLMFWGF
CHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA