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The map label for this gene is ltrA [H]

Identifier: 78066999

GI number: 78066999

Start: 2624130

End: 2625104

Strand: Reverse

Name: ltrA [H]

Synonym: Bcep18194_A5530

Alternate gene names: 78066999

Gene position: 2625104-2624130 (Counterclockwise)

Preceding gene: 78067003

Following gene: 78066989

Centisome position: 71.06

GC content: 67.18

Gene sequence:

>975_bases
ATGAATATCGATGCACATAACCTGAACGACCTCATGTACTTTTCGCAGGTCGTCGAACATGGCGGTTTCTCGGCCGCGGA
GCGCGTGCTGGGCATCTCGAAATCGCGCCTGTCGCGGCGCCTGACCGAACTCGAGGCGGCGCTCGGCGTGCGCCTGCTGC
AGCGCTCCACACGCAAGCTCGCGTTGACCGAGGCGGGGGAGCTGTTCTACCAGCATTGCCAGGCGATGCTGGCCGAAGCG
CAGGCGGCGATGAACGCAGTCCAGCAGCTGCGCTCGTCGCCGCGCGGCTCGGTGCGCGTCAGCGTGCCCGTGACGCTGTC
GCAGACGATGCTGTCGCGCATCCTGCCCGAATTCCTGCGTCGCTATCCCGAGGTGAAGGTGCACGTCCGCGTGACGAATC
GCGTGATCGACCTGTTCGAGGATTCGATCGACGTCGCGCTGCGCGTGCGCTCGGAGCCGCCGCAGAACGCGAACATCGTC
GTGCGGCCGCTGTGGCGCACCGAGCAGATGCTGGTCGGCGCGCCGAGCCTGCTGAGCCAGAATGCGCCGCCGCTGGTACC
GGACGACCTGAGCGGATTCGAAACGCTCGATACACCGAGCGTCGACGGGCGACACGTGTTCAACCTGATCGCGCCGGACG
GCACGCGTCACGTGCACGAGCACGACCCGCGGCTCGTGACGGCCGACCTGATGACGATCCGTGAAGCCGTGCTCGATGGC
CTCGGCATCGCGGCACTGCCGGAGATGATGTACGGCAACGCGCTGCGCGCGGGGCAACTGTCGCCAGTGATGCCGGGCTG
GACGCTGCCGGTGCCGCAACTGTACGCGGTGTTCGTGTCGCGGCAGGGGATGCCGCCCGCGGTGCGTGCGTTCGTCGACT
ATCTGGTCGAGAAGCTCGACCACGGCGCCTACAAGGATCCGGGGTGCCCGGAACGGGCGAAGAAGGAAGCGGCGGCCGAT
GTTTCGGCGACCTGA

Upstream 100 bases:

>100_bases
GAATAGCGTTATTTTTGAAACATAGCGCTATTATATTGGGCGTTTTACCGTTCGATTCGCGACGGTTCGCAATGGATTGT
TCTGAAAATGGAACGATGAG

Downstream 100 bases:

>100_bases
ACACGACACGCACGGCGAGGCAAATTTGTTTTGTCATTGAAGCGTCGCCTGCAATCGCAAGTTTCAATCGCCGGAACCTT
GAATGCGCGTGCGCGCGGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MNIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTEAGELFYQHCQAMLAEA
QAAMNAVQQLRSSPRGSVRVSVPVTLSQTMLSRILPEFLRRYPEVKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIV
VRPLWRTEQMLVGAPSLLSQNAPPLVPDDLSGFETLDTPSVDGRHVFNLIAPDGTRHVHEHDPRLVTADLMTIREAVLDG
LGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEKLDHGAYKDPGCPERAKKEAAAD
VSAT

Sequences:

>Translated_324_residues
MNIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTEAGELFYQHCQAMLAEA
QAAMNAVQQLRSSPRGSVRVSVPVTLSQTMLSRILPEFLRRYPEVKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIV
VRPLWRTEQMLVGAPSLLSQNAPPLVPDDLSGFETLDTPSVDGRHVFNLIAPDGTRHVHEHDPRLVTADLMTIREAVLDG
LGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEKLDHGAYKDPGCPERAKKEAAAD
VSAT
>Mature_324_residues
MNIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTEAGELFYQHCQAMLAEA
QAAMNAVQQLRSSPRGSVRVSVPVTLSQTMLSRILPEFLRRYPEVKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIV
VRPLWRTEQMLVGAPSLLSQNAPPLVPDDLSGFETLDTPSVDGRHVFNLIAPDGTRHVHEHDPRLVTADLMTIREAVLDG
LGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEKLDHGAYKDPGCPERAKKEAAAD
VSAT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=33.3333333333333, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1786401, Length=289, Percent_Identity=31.8339100346021, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=27.1777003484321, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI87081978, Length=289, Percent_Identity=28.0276816608997, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI145693193, Length=291, Percent_Identity=27.4914089347079, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=25.5172413793103, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1787589, Length=297, Percent_Identity=27.6094276094276, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788481, Length=294, Percent_Identity=24.4897959183673, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI157672245, Length=138, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787601, Length=172, Percent_Identity=23.8372093023256, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1789173, Length=292, Percent_Identity=23.972602739726, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1790011, Length=303, Percent_Identity=21.1221122112211, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788297, Length=277, Percent_Identity=24.5487364620939, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788748, Length=121, Percent_Identity=32.2314049586777, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786448, Length=301, Percent_Identity=25.2491694352159, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789506, Length=316, Percent_Identity=22.1518987341772, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787879, Length=174, Percent_Identity=31.6091954022989, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1788706, Length=151, Percent_Identity=27.1523178807947, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35754; Mature: 35754

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKL
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALTEAGELFYQHCQAMLAEAQAAMNAVQQLRSSPRGSVRVSVPVTLSQTMLSRILPEFLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHH
RYPEVKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQ
HCCCEEEEEEEHHHHHHHHHHCHHEEEEECCCCCCCCCEEEEECCCCHHHHHCCHHHHCC
NAPPLVPDDLSGFETLDTPSVDGRHVFNLIAPDGTRHVHEHDPRLVTADLMTIREAVLDG
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHHHC
LGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEKLD
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
HGAYKDPGCPERAKKEAAADVSAT
CCCCCCCCCCHHHHHHHHCCCCCC
>Mature Secondary Structure
MNIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKL
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALTEAGELFYQHCQAMLAEAQAAMNAVQQLRSSPRGSVRVSVPVTLSQTMLSRILPEFLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHH
RYPEVKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQ
HCCCEEEEEEEHHHHHHHHHHCHHEEEEECCCCCCCCCEEEEECCCCHHHHHCCHHHHCC
NAPPLVPDDLSGFETLDTPSVDGRHVFNLIAPDGTRHVHEHDPRLVTADLMTIREAVLDG
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHHHC
LGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEKLD
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
HGAYKDPGCPERAKKEAAADVSAT
CCCCCCCCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]