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The map label for this gene is fecI [H]

Identifier: 78066922

GI number: 78066922

Start: 2530406

End: 2530924

Strand: Reverse

Name: fecI [H]

Synonym: Bcep18194_A5453

Alternate gene names: 78066922

Gene position: 2530924-2530406 (Counterclockwise)

Preceding gene: 78066924

Following gene: 78066921

Centisome position: 68.51

GC content: 66.09

Gene sequence:

>519_bases
ATGGGCGTCATCGACAGTCATGCGCAGCGGGGTTTCCGTGCGCTCTACAACGATCATCACGGCTGGCTGCGCGGCTGGCT
GCGCAAGAAGCTCGGCAATGCGTGCGACGCGGCCGATCTCGCCCACGACACCTATCTGCGCGTGCTCGCATCCGGCACGA
CGCCTCAACCCGACGATTCGCGCCGCTACCTGACCCAGATCGCGAACGGACTCGTGATCGATCTCTATCGGCGGCGGCAT
ATCGAGTCGGCCTATCTCGACACGGTTCGATACCTGCCCGAGGCCGAAGCGCCTTCTCCCGAAACACGCGCGCTCGTGAT
CGAGGCGCTGTGCGAAATCGACGCGATGCTCGACCGCCTGCCCGCCAACGCACGCACGGCGCTGCTGCTGTGCAAGCTAG
ACGGCCTGACCTATCGCGAGATCGCCGCGCAGCTCGGCGTGTCGGTGTCGTCGGTCGAGAAGTACGTCGCGTCCGCGCTG
CGCGCGTGCTATGCGGCGCTCTACGGGAGCGCATCGTGA

Upstream 100 bases:

>100_bases
GGCCGGATTCCCGCTTGCCAGTCCCGCCTCCTGTCTCATAAAATTAATGAGAATCATTATCATTAATGGGGCGCTGCGCG
ACCACGCGGCGTCGGGGAAC

Downstream 100 bases:

>100_bases
GCGGGCGGCAGGGCGATGCATTGCCCGAGGCCGTCGTCGAGCAGGCGATCGGCTGGCTTGCCCGTCTGTGGTCGGGCGAC
GCGACCGACGACAATCGGCG

Product: sigma-24 (FecI-like)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MGVIDSHAQRGFRALYNDHHGWLRGWLRKKLGNACDAADLAHDTYLRVLASGTTPQPDDSRRYLTQIANGLVIDLYRRRH
IESAYLDTVRYLPEAEAPSPETRALVIEALCEIDAMLDRLPANARTALLLCKLDGLTYREIAAQLGVSVSSVEKYVASAL
RACYAALYGSAS

Sequences:

>Translated_172_residues
MGVIDSHAQRGFRALYNDHHGWLRGWLRKKLGNACDAADLAHDTYLRVLASGTTPQPDDSRRYLTQIANGLVIDLYRRRH
IESAYLDTVRYLPEAEAPSPETRALVIEALCEIDAMLDRLPANARTALLLCKLDGLTYREIAAQLGVSVSSVEKYVASAL
RACYAALYGSAS
>Mature_171_residues
GVIDSHAQRGFRALYNDHHGWLRGWLRKKLGNACDAADLAHDTYLRVLASGTTPQPDDSRRYLTQIANGLVIDLYRRRHI
ESAYLDTVRYLPEAEAPSPETRALVIEALCEIDAMLDRLPANARTALLLCKLDGLTYREIAAQLGVSVSSVEKYVASALR
ACYAALYGSAS

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=152, Percent_Identity=51.3157894736842, Blast_Score=161, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19022; Mature: 18891

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVIDSHAQRGFRALYNDHHGWLRGWLRKKLGNACDAADLAHDTYLRVLASGTTPQPDDS
CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHH
RRYLTQIANGLVIDLYRRRHIESAYLDTVRYLPEAEAPSPETRALVIEALCEIDAMLDRL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
PANARTALLLCKLDGLTYREIAAQLGVSVSSVEKYVASALRACYAALYGSAS
CCCCHHEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GVIDSHAQRGFRALYNDHHGWLRGWLRKKLGNACDAADLAHDTYLRVLASGTTPQPDDS
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHH
RRYLTQIANGLVIDLYRRRHIESAYLDTVRYLPEAEAPSPETRALVIEALCEIDAMLDRL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
PANARTALLLCKLDGLTYREIAAQLGVSVSSVEKYVASALRACYAALYGSAS
CCCCHHEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]