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The map label for this gene is radA [H]

Identifier: 78066816

GI number: 78066816

Start: 2406217

End: 2407593

Strand: Reverse

Name: radA [H]

Synonym: Bcep18194_A5347

Alternate gene names: 78066816

Gene position: 2407593-2406217 (Counterclockwise)

Preceding gene: 78066817

Following gene: 78066815

Centisome position: 65.17

GC content: 68.7

Gene sequence:

>1377_bases
GTGGCCAAACAGAAAACCGTATACGTCTGCAGCGAGTGCGGCGGACAGACCCCGAAGTGGCAGGGCCAATGCCCGTCGTG
CCAGGCCTGGAACACGCTGGTTGAATCGGTCGCCGAGGCGCCGGCTGCCCATCGGTTCCAGTCGCTCGCGAAGCGGGCGC
CGGTACAACGTCTCGTCGACATCGAAGCGGCCGACGTGCCGCGCTTCTCGACCGGCATCGGCGAATTCGACCGCGTGCTC
GGCGGCGGGCTGGTCCCGGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCGGACATCGCGAGCGAGCGGCGCGCGCTCTATATCAGCGGTGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTGGCGCTGCTCGACGGCGGTGCGGTGGCGGATGAACTGAAGCTGCTCGCCGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGATGCGGAGCGGCCGGATGTCGCCGTGATCGACTCGATCCAGACCGTCTATTCGGAAGCGCTCACGTCGGC
GCCGGGCTCGGTCGCGCAGGTGCGCGAGTGCGCGGCGCAGCTCACGCGCATCGCGAAGCAGTCGGGCACCGCGATCATCA
TGGTCGGGCACGTGACGAAGGAGGGCAACCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTACTTC
GAAGGCGACACGCATTCGTCGTTCCGGCTCGTGCGTGCGTTCAAGAACCGCTTCGGTGCGGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTGCGCGGCGTCGCGAATCCGTCCGCGCTGTTCCTGTCGCAGCACGAGCAGGTCGTGCCCG
GCTCGTGCGTGCTCGTCACGCAGGAAGGCACGCGCCCGCTGCTCGTCGAAGTCCAGGCGCTCGTCGATACGGCGCACGTG
CCGAACCCGCGCCGGCTCGCGGTCGGCCTCGAGCAGAACCGGCTTGCGATGCTGCTCGCGGTGCTGCACCGGCACGCGGG
CATCGCGTGCTTCGACCAGGACGTGTTCCTCAATGCGGTTGGCGGCGTGAAGATCACCGAGCCGGCCGCCGACCTCGCGG
TGCTGCTCGCGATCCATTCGTCGATGCGCAACAAGGCGTTGCCGAAAGGGCTGATCGTGTTCGGCGAAGTGGGGCTGGCG
GGCGAGATCCGGCCGTCGCCGCGCGGGCAGGAGCGGCTGCGCGAAGCCGCGAAGCTCGGCTTCACGTCCGCGCTGATCCC
GAAGGCGAATGCGCCGAAGCAGCCGATCGAAGGGCTGAACGTGATGGCGGTCGATCGGCTCGAACAGGCGATCGACCGCG
TGCGCGATCTCGAGTAA

Upstream 100 bases:

>100_bases
CGATCGACGACGTCGCCCGCCATTGCGGCACGATCGGTTACGAGCTGATGTGCGCGGTCGCCGGCCGCGTGCCCGTGCGC
GCGGAATAAGGGCGTCGCGC

Downstream 100 bases:

>100_bases
CCGGCCCGGCAGGCGCCCGGGCCAAGCGCGCGGGCGATCTGTCGCGTAATTCGTTGTAAAGAAGATGTAGGGTTCTGTAA
CCCGCCGGACATCGCTTTTC

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 458; Mature: 457

Protein sequence:

>458_residues
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAEAPAAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLDGGAVADELKLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEVQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTSALIPKANAPKQPIEGLNVMAVDRLEQAIDRVRDLE

Sequences:

>Translated_458_residues
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAEAPAAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLDGGAVADELKLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEVQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTSALIPKANAPKQPIEGLNVMAVDRLEQAIDRVRDLE
>Mature_457_residues
AKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAEAPAAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVLG
GGLVPGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLDGGAVADELKLLAEIQLEKIQA
AIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYFE
GDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEVQALVDTAHVP
NPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLAG
EIRPSPRGQERLREAAKLGFTSALIPKANAPKQPIEGLNVMAVDRLEQAIDRVRDLE

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=465, Percent_Identity=57.8494623655914, Blast_Score=535, Evalue=1e-153,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 48824; Mature: 48693

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAEAPAAHRFQSLAKRAPVQRLVD
CCCCCEEEEEHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHC
IEAADVPRFSTGIGEFDRVLGGGLVPGGVVLIGGDPGIGKSTLLLQSLADIASERRALYI
CCCCCCCCHHCCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
SGEESAAQIALRAQRLALLDGGAVADELKLLAEIQLEKIQAAIDAERPDVAVIDSIQTVY
ECCCHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
SEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHEE
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVT
CCCCCHHHHHHHHHHHHCCCHHHCCHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCEEEEE
QEGTRPLLVEVQALVDTAHVPNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAV
CCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEECCCHHHCCC
GGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLAGEIRPSPRGQERLREAAKLG
CCCEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHC
FTSALIPKANAPKQPIEGLNVMAVDRLEQAIDRVRDLE
CHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAEAPAAHRFQSLAKRAPVQRLVD
CCCCEEEEEHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHC
IEAADVPRFSTGIGEFDRVLGGGLVPGGVVLIGGDPGIGKSTLLLQSLADIASERRALYI
CCCCCCCCHHCCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
SGEESAAQIALRAQRLALLDGGAVADELKLLAEIQLEKIQAAIDAERPDVAVIDSIQTVY
ECCCHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
SEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHEE
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVT
CCCCCHHHHHHHHHHHHCCCHHHCCHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCEEEEE
QEGTRPLLVEVQALVDTAHVPNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAV
CCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEECCCHHHCCC
GGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLAGEIRPSPRGQERLREAAKLG
CCCEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHC
FTSALIPKANAPKQPIEGLNVMAVDRLEQAIDRVRDLE
CHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]