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The map label for this gene is ydfH [H]

Identifier: 78066750

GI number: 78066750

Start: 2336336

End: 2337040

Strand: Reverse

Name: ydfH [H]

Synonym: Bcep18194_A5281

Alternate gene names: 78066750

Gene position: 2337040-2336336 (Counterclockwise)

Preceding gene: 78066751

Following gene: 78066749

Centisome position: 63.26

GC content: 68.65

Gene sequence:

>705_bases
ATGCCGATCATGAACGAGCCCGAATCCCACCCGTCCGGTGCAGCCAGCCCCGAAGCGATCGCCGAGCGGATCCGCACGGC
GATCCTCGAGCATCGGCTCGCGCCGGGCGCGAAGCTGACGGAGGCGCAGCTCTGCGACGTGTTCAATGTGAAGCGCGGGG
CGATCCGCCAGGCGCTCGCGCAGCTCGCGACCGACAAGCTCGTCGATCTCGAGCCGAACCGTGGCGCGTTCGTCGCGAGT
CCGACGCTGCAGGACGTGCACGAGGTGTTCGAGATGCGCCGGATCATCGAGCTCGCCGTGGTTGAGCGGCTCGCGACCGG
GCCCGGCGCGAAGCGGCTGAAGGGCGTCGCCTCGCTGATCGAGAAGGAACGCAAGGCGTTCCAGCGGCAGGACTTCGCGG
CCTGGATCCGCCTGTCGGGCGAATTCCATACGACGCTCGCCACGCTGATGGGCAATGCGACGCTCAGCGAGTGCCTCGAC
GGGCTCGTCGCACGCTCGACGCTGATGTCCGCGCTGTACGAGTCGCACGGCCGCAGCCCGTGCTCGTGCGACGACCACGA
CGAGATCCTCGGCGCGCTGGAGGCGGGCGATCCGAAGCGGGCGGTGACGCTGATGGCGCACCACCTGCAGCATGTCGAAC
TGAAGATGCTGGACCGGCCCGCACAAGGGCAGGTCGATTTGCGCGAAGTGTTCGGCGGCGCCTGA

Upstream 100 bases:

>100_bases
CACCGAACGGGGTCGCATCGATGCACGCCGATTGTGCGCAATACCGGAAAAGAATTGTTGACAATCTTTATGTCCGCCCT
AGGATGAGGATCATCACACG

Downstream 100 bases:

>100_bases
GCGGCGACGCGAACCCGGCCGCGCGCCACAAGAACGAGCGAAATGCAGGCCCGCGGCGTTTGCCGCGGGCCGCTGGTCCG
ACTCCGGGCGTCGATCCGGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MPIMNEPESHPSGAASPEAIAERIRTAILEHRLAPGAKLTEAQLCDVFNVKRGAIRQALAQLATDKLVDLEPNRGAFVAS
PTLQDVHEVFEMRRIIELAVVERLATGPGAKRLKGVASLIEKERKAFQRQDFAAWIRLSGEFHTTLATLMGNATLSECLD
GLVARSTLMSALYESHGRSPCSCDDHDEILGALEAGDPKRAVTLMAHHLQHVELKMLDRPAQGQVDLREVFGGA

Sequences:

>Translated_234_residues
MPIMNEPESHPSGAASPEAIAERIRTAILEHRLAPGAKLTEAQLCDVFNVKRGAIRQALAQLATDKLVDLEPNRGAFVAS
PTLQDVHEVFEMRRIIELAVVERLATGPGAKRLKGVASLIEKERKAFQRQDFAAWIRLSGEFHTTLATLMGNATLSECLD
GLVARSTLMSALYESHGRSPCSCDDHDEILGALEAGDPKRAVTLMAHHLQHVELKMLDRPAQGQVDLREVFGGA
>Mature_233_residues
PIMNEPESHPSGAASPEAIAERIRTAILEHRLAPGAKLTEAQLCDVFNVKRGAIRQALAQLATDKLVDLEPNRGAFVASP
TLQDVHEVFEMRRIIELAVVERLATGPGAKRLKGVASLIEKERKAFQRQDFAAWIRLSGEFHTTLATLMGNATLSECLDG
LVARSTLMSALYESHGRSPCSCDDHDEILGALEAGDPKRAVTLMAHHLQHVELKMLDRPAQGQVDLREVFGGA

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=208, Percent_Identity=24.5192307692308, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25531; Mature: 25399

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIMNEPESHPSGAASPEAIAERIRTAILEHRLAPGAKLTEAQLCDVFNVKRGAIRQALA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
QLATDKLVDLEPNRGAFVASPTLQDVHEVFEMRRIIELAVVERLATGPGAKRLKGVASLI
HHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
EKERKAFQRQDFAAWIRLSGEFHTTLATLMGNATLSECLDGLVARSTLMSALYESHGRSP
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
CSCDDHDEILGALEAGDPKRAVTLMAHHLQHVELKMLDRPAQGQVDLREVFGGA
CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCC
>Mature Secondary Structure 
PIMNEPESHPSGAASPEAIAERIRTAILEHRLAPGAKLTEAQLCDVFNVKRGAIRQALA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
QLATDKLVDLEPNRGAFVASPTLQDVHEVFEMRRIIELAVVERLATGPGAKRLKGVASLI
HHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
EKERKAFQRQDFAAWIRLSGEFHTTLATLMGNATLSECLDGLVARSTLMSALYESHGRSP
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
CSCDDHDEILGALEAGDPKRAVTLMAHHLQHVELKMLDRPAQGQVDLREVFGGA
CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]