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The map label for this gene is yhjC [C]

Identifier: 78066743

GI number: 78066743

Start: 2329647

End: 2330612

Strand: Direct

Name: yhjC [C]

Synonym: Bcep18194_A5274

Alternate gene names: 78066743

Gene position: 2329647-2330612 (Clockwise)

Preceding gene: 78066741

Following gene: 78066755

Centisome position: 63.06

GC content: 68.84

Gene sequence:

>966_bases
ATGGATCGATTCGACGCAATGCAGGCGTTCGCCCGCGTGGTGGAAGCCGGCAGTTTCACGAAGGCAGCCGAGACGCTGCA
CATGAGCCGCACCACCGTCACGCAGCTCGTACAGCAGCTCGAAGCGCGGCTGCGCGTGAAGCTGTTCAACCGTACGACGC
GCAAGGTCGTCGTCACCGCGGACGGCGCCGCGTACTACGATCGCGTCGTGCGGCTGCTGGCCGACATGGACGATGCCGAA
ACGAGCCTGTCCGCCGCCTCCGCATCGCCCCGGGGGCGGCTGCGCGTGGACGTGCCGAGCCCGTTCGCGCGCCTGATCCT
GATCCCCGCGCTGCCCGCGTTCCATGCGCGCTATCCGGACATCCAGCTCGACATGGGCGTGAGCGACCGCGTGGTGGACG
TGATCGGCGAGAACGTCGACTGCGTCATGCGCGGCGGCGAGCCGACCGACCGCGCGCTGGTCGCGCGTCGCGTCGGCGAC
CTGCGGCTCGGCGTGTACGCGTCGCCGGCCTATCTCGCACGCGCCGGCATGCCGACGCATCCGGACGAGCTGGAGGACAC
CCACCACCGGATCGTCGGTTTTCTGTGGGCGCGCACCGGTAAGGCATTGCCCTTTGCGATGACATGCGACGGCGAGCAGG
TCACCGTGCGCGGACGCTACGTGCTTGCGGTCGACGACGGCAATGCGTACCTCGAGGCCGGCCTCGCCGGGCTGGGTATT
CTGTGGCTGCCCGACTACATGGCCGGCGTGCATCGCGCTCGCGGCGAACTGGTACCGCTATTCGAGCAGTGGCAACTCGA
ACCGATGCCGATGTACGTCGCGTTTCCGCCGAACCGGCACGTCAGTGCGAAGCTGCGGGTGTTCGTCGACTGGGTCGCCG
AGCTGATGGCGCAGCATGCGCCGGTCACGAACCGGCGGCGCCGAGTCGGCAGCTCGCGCGACACGCGCAAAACTGCCGCG
ACCTGA

Upstream 100 bases:

>100_bases
AGGCACTTTAAGGTCCGTTGCACGGCGAATAAACCGGCAACCCTGTCCAACACTGTTTGGACATCCCAAACAATTCCGAC
CGACGCGGAGCCCTGACCCG

Downstream 100 bases:

>100_bases
ATCGCGCCGAATCGACCGCACATAAAAAAACCCGCGCATCGTGCGCGGGTTTCGTCAGACGCTGGCAGAAACGCCAGCGA
CTCAGGCCGTCAGCGCGTGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MDRFDAMQAFARVVEAGSFTKAAETLHMSRTTVTQLVQQLEARLRVKLFNRTTRKVVVTADGAAYYDRVVRLLADMDDAE
TSLSAASASPRGRLRVDVPSPFARLILIPALPAFHARYPDIQLDMGVSDRVVDVIGENVDCVMRGGEPTDRALVARRVGD
LRLGVYASPAYLARAGMPTHPDELEDTHHRIVGFLWARTGKALPFAMTCDGEQVTVRGRYVLAVDDGNAYLEAGLAGLGI
LWLPDYMAGVHRARGELVPLFEQWQLEPMPMYVAFPPNRHVSAKLRVFVDWVAELMAQHAPVTNRRRRVGSSRDTRKTAA
T

Sequences:

>Translated_321_residues
MDRFDAMQAFARVVEAGSFTKAAETLHMSRTTVTQLVQQLEARLRVKLFNRTTRKVVVTADGAAYYDRVVRLLADMDDAE
TSLSAASASPRGRLRVDVPSPFARLILIPALPAFHARYPDIQLDMGVSDRVVDVIGENVDCVMRGGEPTDRALVARRVGD
LRLGVYASPAYLARAGMPTHPDELEDTHHRIVGFLWARTGKALPFAMTCDGEQVTVRGRYVLAVDDGNAYLEAGLAGLGI
LWLPDYMAGVHRARGELVPLFEQWQLEPMPMYVAFPPNRHVSAKLRVFVDWVAELMAQHAPVTNRRRRVGSSRDTRKTAA
T
>Mature_321_residues
MDRFDAMQAFARVVEAGSFTKAAETLHMSRTTVTQLVQQLEARLRVKLFNRTTRKVVVTADGAAYYDRVVRLLADMDDAE
TSLSAASASPRGRLRVDVPSPFARLILIPALPAFHARYPDIQLDMGVSDRVVDVIGENVDCVMRGGEPTDRALVARRVGD
LRLGVYASPAYLARAGMPTHPDELEDTHHRIVGFLWARTGKALPFAMTCDGEQVTVRGRYVLAVDDGNAYLEAGLAGLGI
LWLPDYMAGVHRARGELVPLFEQWQLEPMPMYVAFPPNRHVSAKLRVFVDWVAELMAQHAPVTNRRRRVGSSRDTRKTAA
T

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=300, Percent_Identity=33.3333333333333, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=35.0515463917526, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI1789639, Length=298, Percent_Identity=29.5302013422819, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1787128, Length=285, Percent_Identity=30.5263157894737, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1787589, Length=287, Percent_Identity=29.616724738676, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI87081978, Length=304, Percent_Identity=27.6315789473684, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=24.6575342465753, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1789173, Length=148, Percent_Identity=31.0810810810811, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1786448, Length=291, Percent_Identity=23.7113402061856, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI157672245, Length=116, Percent_Identity=34.4827586206897, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1786508, Length=271, Percent_Identity=24.3542435424354, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87082132, Length=287, Percent_Identity=24.390243902439, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35625; Mature: 35625

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFDAMQAFARVVEAGSFTKAAETLHMSRTTVTQLVQQLEARLRVKLFNRTTRKVVVTA
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
DGAAYYDRVVRLLADMDDAETSLSAASASPRGRLRVDVPSPFARLILIPALPAFHARYPD
CCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHCCCHHHCCCCC
IQLDMGVSDRVVDVIGENVDCVMRGGEPTDRALVARRVGDLRLGVYASPAYLARAGMPTH
EEEECCCCHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCEEEEEEECHHHHHHCCCCCC
PDELEDTHHRIVGFLWARTGKALPFAMTCDGEQVTVRGRYVLAVDDGNAYLEAGLAGLGI
CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEEEEEEEECCCCEEHHHHHHCHH
LWLPDYMAGVHRARGELVPLFEQWQLEPMPMYVAFPPNRHVSAKLRVFVDWVAELMAQHA
HHHHHHHHHHHHHCCCCCCCHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
PVTNRRRRVGSSRDTRKTAAT
CCCHHHHHCCCCCCCHHHCCC
>Mature Secondary Structure
MDRFDAMQAFARVVEAGSFTKAAETLHMSRTTVTQLVQQLEARLRVKLFNRTTRKVVVTA
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
DGAAYYDRVVRLLADMDDAETSLSAASASPRGRLRVDVPSPFARLILIPALPAFHARYPD
CCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHCCCHHHCCCCC
IQLDMGVSDRVVDVIGENVDCVMRGGEPTDRALVARRVGDLRLGVYASPAYLARAGMPTH
EEEECCCCHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCEEEEEEECHHHHHHCCCCCC
PDELEDTHHRIVGFLWARTGKALPFAMTCDGEQVTVRGRYVLAVDDGNAYLEAGLAGLGI
CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEEEEEEEECCCCEEHHHHHHCHH
LWLPDYMAGVHRARGELVPLFEQWQLEPMPMYVAFPPNRHVSAKLRVFVDWVAELMAQHA
HHHHHHHHHHHHHCCCCCCCHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
PVTNRRRRVGSSRDTRKTAAT
CCCHHHHHCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]