| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is yfcU [H]
Identifier: 78066242
GI number: 78066242
Start: 1771298
End: 1773784
Strand: Direct
Name: yfcU [H]
Synonym: Bcep18194_A4772
Alternate gene names: 78066242
Gene position: 1771298-1773784 (Clockwise)
Preceding gene: 78066241
Following gene: 78066243
Centisome position: 47.95
GC content: 65.94
Gene sequence:
>2487_bases GTGCGAATCAGACATTCCTTCCTTTGCGTCTCCGTGCTGGTTGTCGGCAGCCAGAGCCATGCGACGGAATTCAATTCGTC GTTTCTCGACATCGACGGAACGAGCAACGTCGACCTGTCGCAGTTCTCGCAGGCCGACTTCACGCTGCCGGGCGAGTACA TGCTCGACGTGCAGGTCAACGACCTGTTCCTCGGGCTGCAGGCGATCGAGTTCGTGGCCGTCGACACGTCTGGTGCGGGC AAGCCATGCTTGCGTCCGGAACTCGTCGCGCGGTTCGGCCTGAAGCCGTCGCTCGCGAAGGACCTGCCGCGCTTCCAGGG CGGAAGCTGCGTCGACCTGACGGCGATCGAAGGCGCAACCGTGCGTTACCTGAAAAGCGACGGGCGGCTCAAGATCACGA TTCCGCAGGCCGCGCTCGAGTTCACCGATTCGACCTACCTGCCGCCGGAGAACTGGTCCGAAGGGATTCCCGGTGCGATG CTCGACTATCGCGTGATCGCGAACACGAACCGCAGTTTCGGTGCGGACGGCGGGCAGAACAATTCGATCCAGGCCTACGG GACGATCGGCGCGAACTGGGATGCGTGGCGCTTTCGCGGCGACTACCAGGCGCAATCGAACTCGGGCAACAAGGCATACG CGGACCGCACCTTCCGCTTCAGCCGGCTTTATGCATTTCGCGCGCTGCCGTCGATCCAGTCGACGGCGACGTTCGGCGAG GACTACCTGAGCTCGGACATTTTCGACACGTTCGCGCTGACGGGCGCATCGATCCGCAGCGACGACCGCATGCTGCCGCC TTCGCTGCGCGGCTACGCGCCGCTGATCTCGGGCGTCGCGCGCACCAACGCGACCGTGACCGTGTCGCAGGCGGGCCGCG TGCTGTACGTGACGCGCGTGTCGCCGGGCGCCTTCGCGCTGCAGAACATCAACACGAGCGTGCAGGGCACGCTCGACGTC GCGGTCGAGGAAGAGGACGGCAGCGTGCAGCGCTTCCAGGTGACGACGGCCGCCGTGCCGTTTCTCGCGCGTGCCGGACA ATTGCGCTACAAGATGGCGCTCGGCAAGCCGCGCCAGTTCGGCGGCGCCGGCATCACGCCGTTCTTCGGTTTCGGCGAAG TGGCATACGGCCTGCCGCTGGACTTCACCGTGTACGGCGGTTTCATCGCCGCATCGGGCTATACGTCGATCGCGCTGGGC GTCGGCCGCGATTTCGGTACGTTCGGCGCGCTGTCGGCCGACGTCACGCATGCGCGGGCGCGCCTGTGGTGGAACGGCGC GACACGCAACGGCAACTCGTACCGCGTCAACTACTCGAAGCACTTCGACGGTCTCGACGCCGACGTGCGCTTCTTCGGCT ACCGTTTTTCGGAGCGCGACTACACGAACTTCGCGCAGTTCACGGGCGACCCGACGTCGTATGGTCTTGCCAACAGCAAG CAGCGCTATTCGGCATCGATGTCGAAGCGCTTCGGCGACACGTCGACCTATTTCTCGTACGACCAGACGACTTACTGGGC GCGCGAGTCCGAGCAGCGCGTCGGCATCACGCTGACGCGCTCGTTCTCGATCGGTGCGCTGCGCAACCTGAGCGTGAACC TGTCGGCATTTCGCACGCAGAGCGCGGGCGGGAGCGGCAACCAGTTCTCCATCAACGCGACGCTGCCGATCGGCGTCAAA CACACCCTCACGTCGAACGTGACGACGGGTAGCGGCAGCACGAGCGTGAATGCCGGCTACATCTACGACGATTCGGACGG CCGCACCTACCAGATCAACACGGGCGCGACCGACGGCCGTGCATCGGCGAACGCGAGCTTCCGGCAGCGCTCGTCGACGT ACCAGCTCAACGCGCAGGCGTCGACGCTTGCCAATTCGTATGCGGCCGCGTCGCTCGAGGTCGACGGCTCGTTCGTCGCG ACGCAGTACGGCATCTCCGCGCACGCGAACGGCAACGCGGGCGATACGCGCTTGCTGGTGTCGACCGACGGTGTGCCCGA CGTGCCGCTGTCCGGCTCGCTCACCCATACCGATTCGCGCGGCTATGGGGTGCTCGACGGGATCTCGCCGTACAACGTGT ACGACGCGACCGTCAACGTCGAGAAGCTGCCGCTCGAAGTGCAGGTGACGAACCCGATCCAGCGCATGGTGCTGACCGAC GGCGCGATCGGCTTCGTGAAGTTCACCGCCGCGCGCGGCAGCAACCTGTACCTGACGCTGACCGACGCGGCCGGCAAGCC GCTGCCGTTCGGTGCGTCGGTGCAGGACGCGGCGAACGGCAAGGAACTCGGCATCGTCGGCGAGGGTGGCGCGGCGTTCC TGACCCAGGTTCAGCCGAAATCCACGCTCGCGGTGCGGGCGGGCGAACGCACGCTTTGCACGGTCGACACACTGCCGAAC CAGCTCCAACTCGAAGGCACGCCGATCCCGGTGACGTGCCAGACACCCGGCGAGTCGCATGCAGCGGCCGCGCGGGTCGA ACGATGA
Upstream 100 bases:
>100_bases GCTACGAGTAAGCGCCTGTATCGGAGGAGGGGTGCGTGCATCCCTTCCTCCCTCTGCTTTCCTTCCTGTTTTCTTCTCCT CGGACTTCCGGTAGCGCCGC
Downstream 100 bases:
>100_bases TTCCACGGATCCTGCGATGAACCATTTCTTCTCCCTTTCCTTTTCGCGGCGCGCATGGGGCGTGTTCGCAACCGCCGGCG CGCTGCTCGCGGGCGCCGCG
Product: fimbrial biogenesis outer membrane usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 828; Mature: 828
Protein sequence:
>828_residues MRIRHSFLCVSVLVVGSQSHATEFNSSFLDIDGTSNVDLSQFSQADFTLPGEYMLDVQVNDLFLGLQAIEFVAVDTSGAG KPCLRPELVARFGLKPSLAKDLPRFQGGSCVDLTAIEGATVRYLKSDGRLKITIPQAALEFTDSTYLPPENWSEGIPGAM LDYRVIANTNRSFGADGGQNNSIQAYGTIGANWDAWRFRGDYQAQSNSGNKAYADRTFRFSRLYAFRALPSIQSTATFGE DYLSSDIFDTFALTGASIRSDDRMLPPSLRGYAPLISGVARTNATVTVSQAGRVLYVTRVSPGAFALQNINTSVQGTLDV AVEEEDGSVQRFQVTTAAVPFLARAGQLRYKMALGKPRQFGGAGITPFFGFGEVAYGLPLDFTVYGGFIAASGYTSIALG VGRDFGTFGALSADVTHARARLWWNGATRNGNSYRVNYSKHFDGLDADVRFFGYRFSERDYTNFAQFTGDPTSYGLANSK QRYSASMSKRFGDTSTYFSYDQTTYWARESEQRVGITLTRSFSIGALRNLSVNLSAFRTQSAGGSGNQFSINATLPIGVK HTLTSNVTTGSGSTSVNAGYIYDDSDGRTYQINTGATDGRASANASFRQRSSTYQLNAQASTLANSYAAASLEVDGSFVA TQYGISAHANGNAGDTRLLVSTDGVPDVPLSGSLTHTDSRGYGVLDGISPYNVYDATVNVEKLPLEVQVTNPIQRMVLTD GAIGFVKFTAARGSNLYLTLTDAAGKPLPFGASVQDAANGKELGIVGEGGAAFLTQVQPKSTLAVRAGERTLCTVDTLPN QLQLEGTPIPVTCQTPGESHAAAARVER
Sequences:
>Translated_828_residues MRIRHSFLCVSVLVVGSQSHATEFNSSFLDIDGTSNVDLSQFSQADFTLPGEYMLDVQVNDLFLGLQAIEFVAVDTSGAG KPCLRPELVARFGLKPSLAKDLPRFQGGSCVDLTAIEGATVRYLKSDGRLKITIPQAALEFTDSTYLPPENWSEGIPGAM LDYRVIANTNRSFGADGGQNNSIQAYGTIGANWDAWRFRGDYQAQSNSGNKAYADRTFRFSRLYAFRALPSIQSTATFGE DYLSSDIFDTFALTGASIRSDDRMLPPSLRGYAPLISGVARTNATVTVSQAGRVLYVTRVSPGAFALQNINTSVQGTLDV AVEEEDGSVQRFQVTTAAVPFLARAGQLRYKMALGKPRQFGGAGITPFFGFGEVAYGLPLDFTVYGGFIAASGYTSIALG VGRDFGTFGALSADVTHARARLWWNGATRNGNSYRVNYSKHFDGLDADVRFFGYRFSERDYTNFAQFTGDPTSYGLANSK QRYSASMSKRFGDTSTYFSYDQTTYWARESEQRVGITLTRSFSIGALRNLSVNLSAFRTQSAGGSGNQFSINATLPIGVK HTLTSNVTTGSGSTSVNAGYIYDDSDGRTYQINTGATDGRASANASFRQRSSTYQLNAQASTLANSYAAASLEVDGSFVA TQYGISAHANGNAGDTRLLVSTDGVPDVPLSGSLTHTDSRGYGVLDGISPYNVYDATVNVEKLPLEVQVTNPIQRMVLTD GAIGFVKFTAARGSNLYLTLTDAAGKPLPFGASVQDAANGKELGIVGEGGAAFLTQVQPKSTLAVRAGERTLCTVDTLPN QLQLEGTPIPVTCQTPGESHAAAARVER >Mature_828_residues MRIRHSFLCVSVLVVGSQSHATEFNSSFLDIDGTSNVDLSQFSQADFTLPGEYMLDVQVNDLFLGLQAIEFVAVDTSGAG KPCLRPELVARFGLKPSLAKDLPRFQGGSCVDLTAIEGATVRYLKSDGRLKITIPQAALEFTDSTYLPPENWSEGIPGAM LDYRVIANTNRSFGADGGQNNSIQAYGTIGANWDAWRFRGDYQAQSNSGNKAYADRTFRFSRLYAFRALPSIQSTATFGE DYLSSDIFDTFALTGASIRSDDRMLPPSLRGYAPLISGVARTNATVTVSQAGRVLYVTRVSPGAFALQNINTSVQGTLDV AVEEEDGSVQRFQVTTAAVPFLARAGQLRYKMALGKPRQFGGAGITPFFGFGEVAYGLPLDFTVYGGFIAASGYTSIALG VGRDFGTFGALSADVTHARARLWWNGATRNGNSYRVNYSKHFDGLDADVRFFGYRFSERDYTNFAQFTGDPTSYGLANSK QRYSASMSKRFGDTSTYFSYDQTTYWARESEQRVGITLTRSFSIGALRNLSVNLSAFRTQSAGGSGNQFSINATLPIGVK HTLTSNVTTGSGSTSVNAGYIYDDSDGRTYQINTGATDGRASANASFRQRSSTYQLNAQASTLANSYAAASLEVDGSFVA TQYGISAHANGNAGDTRLLVSTDGVPDVPLSGSLTHTDSRGYGVLDGISPYNVYDATVNVEKLPLEVQVTNPIQRMVLTD GAIGFVKFTAARGSNLYLTLTDAAGKPLPFGASVQDAANGKELGIVGEGGAAFLTQVQPKSTLAVRAGERTLCTVDTLPN QLQLEGTPIPVTCQTPGESHAAAARVER
Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI87081778, Length=822, Percent_Identity=34.5498783454988, Blast_Score=433, Evalue=1e-122, Organism=Escherichia coli, GI1786744, Length=850, Percent_Identity=29.6470588235294, Blast_Score=295, Evalue=6e-81, Organism=Escherichia coli, GI1790772, Length=821, Percent_Identity=28.8672350791717, Blast_Score=279, Evalue=5e-76, Organism=Escherichia coli, GI1786332, Length=822, Percent_Identity=29.0754257907543, Blast_Score=270, Evalue=2e-73, Organism=Escherichia coli, GI1787172, Length=842, Percent_Identity=27.9097387173397, Blast_Score=267, Evalue=2e-72, Organism=Escherichia coli, GI1789533, Length=840, Percent_Identity=27.0238095238095, Blast_Score=231, Evalue=2e-61, Organism=Escherichia coli, GI1788427, Length=829, Percent_Identity=26.4173703256936, Blast_Score=212, Evalue=8e-56, Organism=Escherichia coli, GI1789610, Length=781, Percent_Identity=23.8156209987196, Blast_Score=92, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 88734; Mature: 88734
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: PS01151 FIMBRIAL_USHER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIRHSFLCVSVLVVGSQSHATEFNSSFLDIDGTSNVDLSQFSQADFTLPGEYMLDVQVN CCCCHHEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHCCCCCCCCCCEEEEEEEC DLFLGLQAIEFVAVDTSGAGKPCLRPELVARFGLKPSLAKDLPRFQGGSCVDLTAIEGAT CEEEEEEEEEEEEEECCCCCCCCCCHHHHHHCCCCHHHHHHCCCCCCCCEEEEEEECCCE VRYLKSDGRLKITIPQAALEFTDSTYLPPENWSEGIPGAMLDYRVIANTNRSFGADGGQN EEEEECCCEEEEEECHHHEEECCCCCCCCCCCCCCCCCHHEEEEEEECCCCCCCCCCCCC NSIQAYGTIGANWDAWRFRGDYQAQSNSGNKAYADRTFRFSRLYAFRALPSIQSTATFGE CCEEEEEECCCCCCCEEEECCCCCCCCCCCEEECCCCEEHHHHHHHHHCCCCHHHHHCCH DYLSSDIFDTFALTGASIRSDDRMLPPSLRGYAPLISGVARTNATVTVSQAGRVLYVTRV HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCEEEEEEE SPGAFALQNINTSVQGTLDVAVEEEDGSVQRFQVTTAAVPFLARAGQLRYKMALGKPRQF CCCEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEHHHHHHHHHCCCEEEEEECCCCCCC GGAGITPFFGFGEVAYGLPLDFTVYGGFIAASGYTSIALGVGRDFGTFGALSADVTHARA CCCCCCCCCCCCCHHCCCCEEEEEECCEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEE RLWWNGATRNGNSYRVNYSKHFDGLDADVRFFGYRFSERDYTNFAQFTGDPTSYGLANSK EEEECCCCCCCCEEEEEEHHCCCCCCCCEEEEEEEECCCCCCCHHHHCCCCCCCCCCCCH QRYSASMSKRFGDTSTYFSYDQTTYWARESEQRVGITLTRSFSIGALRNLSVNLSAFRTQ HHHHHHHHHHCCCCCEEEECCCEEEEECCCCCEEEEEEEECCCCCEEEEEEEEEEEEEEC SAGGSGNQFSINATLPIGVKHTLTSNVTTGSGSTSVNAGYIYDDSDGRTYQINTGATDGR CCCCCCCEEEEEEEEECCEEEEEECCEECCCCCCCCCCEEEEECCCCCEEEEECCCCCCC ASANASFRQRSSTYQLNAQASTLANSYAAASLEVDGSFVATQYGISAHANGNAGDTRLLV CCCCCHHHHCCCEEEEECHHHHHHCCCEEEEEEECCCEEEEEECEEEECCCCCCCEEEEE STDGVPDVPLSGSLTHTDSRGYGVLDGISPYNVYDATVNVEKLPLEVQVTNPIQRMVLTD ECCCCCCCCCCCCEEECCCCCCEEECCCCCCEEEEEEEEEEECEEEEEECCHHHHHEECC GAIGFVKFTAARGSNLYLTLTDAAGKPLPFGASVQDAANGKELGIVGEGGAAFLTQVQPK CCEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCHHCCCCCEEEEEECCCCEEEEECCCC STLAVRAGERTLCTVDTLPNQLQLEGTPIPVTCQTPGESHAAAARVER CEEEEECCCCEEEEECCCCCEEEECCCCEEEEECCCCCCCHHHHCCCC >Mature Secondary Structure MRIRHSFLCVSVLVVGSQSHATEFNSSFLDIDGTSNVDLSQFSQADFTLPGEYMLDVQVN CCCCHHEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHCCCCCCCCCCEEEEEEEC DLFLGLQAIEFVAVDTSGAGKPCLRPELVARFGLKPSLAKDLPRFQGGSCVDLTAIEGAT CEEEEEEEEEEEEEECCCCCCCCCCHHHHHHCCCCHHHHHHCCCCCCCCEEEEEEECCCE VRYLKSDGRLKITIPQAALEFTDSTYLPPENWSEGIPGAMLDYRVIANTNRSFGADGGQN EEEEECCCEEEEEECHHHEEECCCCCCCCCCCCCCCCCHHEEEEEEECCCCCCCCCCCCC NSIQAYGTIGANWDAWRFRGDYQAQSNSGNKAYADRTFRFSRLYAFRALPSIQSTATFGE CCEEEEEECCCCCCCEEEECCCCCCCCCCCEEECCCCEEHHHHHHHHHCCCCHHHHHCCH DYLSSDIFDTFALTGASIRSDDRMLPPSLRGYAPLISGVARTNATVTVSQAGRVLYVTRV HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCEEEEEEE SPGAFALQNINTSVQGTLDVAVEEEDGSVQRFQVTTAAVPFLARAGQLRYKMALGKPRQF CCCEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEHHHHHHHHHCCCEEEEEECCCCCCC GGAGITPFFGFGEVAYGLPLDFTVYGGFIAASGYTSIALGVGRDFGTFGALSADVTHARA CCCCCCCCCCCCCHHCCCCEEEEEECCEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEE RLWWNGATRNGNSYRVNYSKHFDGLDADVRFFGYRFSERDYTNFAQFTGDPTSYGLANSK EEEECCCCCCCCEEEEEEHHCCCCCCCCEEEEEEEECCCCCCCHHHHCCCCCCCCCCCCH QRYSASMSKRFGDTSTYFSYDQTTYWARESEQRVGITLTRSFSIGALRNLSVNLSAFRTQ HHHHHHHHHHCCCCCEEEECCCEEEEECCCCCEEEEEEEECCCCCEEEEEEEEEEEEEEC SAGGSGNQFSINATLPIGVKHTLTSNVTTGSGSTSVNAGYIYDDSDGRTYQINTGATDGR CCCCCCCEEEEEEEEECCEEEEEECCEECCCCCCCCCCEEEEECCCCCEEEEECCCCCCC ASANASFRQRSSTYQLNAQASTLANSYAAASLEVDGSFVATQYGISAHANGNAGDTRLLV CCCCCHHHHCCCEEEEECHHHHHHCCCEEEEEEECCCEEEEEECEEEECCCCCCCEEEEE STDGVPDVPLSGSLTHTDSRGYGVLDGISPYNVYDATVNVEKLPLEVQVTNPIQRMVLTD ECCCCCCCCCCCCEEECCCCCCEEECCCCCCEEEEEEEEEEECEEEEEECCHHHHHEECC GAIGFVKFTAARGSNLYLTLTDAAGKPLPFGASVQDAANGKELGIVGEGGAAFLTQVQPK CCEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCHHCCCCCEEEEEECCCCEEEEECCCC STLAVRAGERTLCTVDTLPNQLQLEGTPIPVTCQTPGESHAAAARVER CEEEEECCCCEEEEECCCCCEEEECCCCEEEEECCCCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503 [H]