BacMap

Definition	Burkholderia sp. 383 chromosome 1, complete genome.
Accession	NC_007510
Length	3,694,126

Click here to switch to the map view.

The map label for this gene is ygfF [C]

Identifier: 78066033

GI number: 78066033

Start: 1534803

End: 1535549

Strand: Direct

Name: ygfF [C]

Synonym: Bcep18194_A4562

Alternate gene names: 78066033

Gene position: 1534803-1535549 (Clockwise)

Preceding gene: 78066032

Following gene: 78066039

Centisome position: 41.55

GC content: 66.13

Gene sequence:

>747_bases
ATGAGCAAGCTGGCAAACAAGGTAGCGATCGTCACGGGCGGATCGAAGGGCATCGGCGCGGCGATCGCGAAGGCGCTGGC
CGCGGAAGGCGCGTCGGTCGTGGTCAACTACGCGAGCAGCAAGGCGGGCGCCGACGCGGTCGTCAGCGCGATCGTCGAAG
CCGGTGGCCGTGCGGTTGCGGTTGGCGGCGACGTGTCGAAGGCGGCCGATGCACAGCGCATCGTCGATACCGCGATCGAC
ACGTACGGGCGTCTCGACGTGCTCGTCAACAATTCCGGCGTGTACGAATTCGGCGCGATCGAGGCGATCACGGAAGAACA
TTACCGCCGCCAGTTCGACACGAACGTGTTCGGCGTGCTGCTGATGACCCAGGCAGCCGTCAAGCATCTCGGCGAAGGCG
CGAGCATCGTCAACATCAGCTCGGTGGTGACCAGCATCACGCCGCCCGCGAGCGCCGTGTACAGCGGCACCAAGGGCGCT
GTCGATGCGATCACCGGCGTGCTCGCGCTCGAACTCGGCCCGCGCAAGATTCGCGTGAACGCGATCAACCCGGGGATGAT
CGTGACCGAAGGCACGCACAGCGCGGGCATCATCGGTTCCGATCTCGACAAGCAGGTGCGCAGCGAGACGCCGCTCGGCC
GTCTCGGCGAACCGGACGACATCGCGTCGGTGGCCGTGTTCCTCGCATCGGACGATGCACGCTGGATGACCGGCGAGCAT
CTCGTCGTGAGCGGCGGGTTGAACTGA

Upstream 100 bases:

>100_bases
CAGCGCACAGTAAATTTCCAGCCATACCGGTTGCGCATCGACGCAACAACCCGGCAACCGGCACCATCCATCGAGAGTCT
TCTGACTGAGGAATGAGATC

Downstream 100 bases:

>100_bases
TCCGGCAAGGGCGGTGCGGCGGCGCGCCCGCGCCGGTCGTGCCGCCCGTTTCGTTACGCGTGCATCGCGAGTGCGTAACG
GCCGACGTGCCACTGCAGGC

Product: Short-chain dehydrogenase/reductase SDR

Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MSKLANKVAIVTGGSKGIGAAIAKALAAEGASVVVNYASSKAGADAVVSAIVEAGGRAVAVGGDVSKAADAQRIVDTAID
TYGRLDVLVNNSGVYEFGAIEAITEEHYRRQFDTNVFGVLLMTQAAVKHLGEGASIVNISSVVTSITPPASAVYSGTKGA
VDAITGVLALELGPRKIRVNAINPGMIVTEGTHSAGIIGSDLDKQVRSETPLGRLGEPDDIASVAVFLASDDARWMTGEH
LVVSGGLN

Sequences:

>Translated_248_residues
MSKLANKVAIVTGGSKGIGAAIAKALAAEGASVVVNYASSKAGADAVVSAIVEAGGRAVAVGGDVSKAADAQRIVDTAID
TYGRLDVLVNNSGVYEFGAIEAITEEHYRRQFDTNVFGVLLMTQAAVKHLGEGASIVNISSVVTSITPPASAVYSGTKGA
VDAITGVLALELGPRKIRVNAINPGMIVTEGTHSAGIIGSDLDKQVRSETPLGRLGEPDDIASVAVFLASDDARWMTGEH
LVVSGGLN
>Mature_247_residues
SKLANKVAIVTGGSKGIGAAIAKALAAEGASVVVNYASSKAGADAVVSAIVEAGGRAVAVGGDVSKAADAQRIVDTAIDT
YGRLDVLVNNSGVYEFGAIEAITEEHYRRQFDTNVFGVLLMTQAAVKHLGEGASIVNISSVVTSITPPASAVYSGTKGAV
DAITGVLALELGPRKIRVNAINPGMIVTEGTHSAGIIGSDLDKQVRSETPLGRLGEPDDIASVAVFLASDDARWMTGEHL
VVSGGLN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=39.1129032258064, Blast_Score=152, Evalue=2e-37,
Organism=Homo sapiens, GI126723750, Length=255, Percent_Identity=34.1176470588235, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=34.9593495934959, Blast_Score=120, Evalue=1e-27,
Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=34.9397590361446, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI59889578, Length=218, Percent_Identity=34.8623853211009, Blast_Score=114, Evalue=8e-26,
Organism=Homo sapiens, GI5031737, Length=248, Percent_Identity=34.6774193548387, Blast_Score=114, Evalue=9e-26,
Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=31.9066147859922, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI19923817, Length=251, Percent_Identity=31.0756972111554, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=38.1720430107527, Blast_Score=102, Evalue=2e-22,
Organism=Homo sapiens, GI10190704, Length=247, Percent_Identity=32.3886639676113, Blast_Score=98, Evalue=9e-21,
Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=35.4166666666667, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI31542939, Length=244, Percent_Identity=29.9180327868852, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI4503301, Length=224, Percent_Identity=27.6785714285714, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI4758504, Length=256, Percent_Identity=27.34375, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI66933014, Length=253, Percent_Identity=29.6442687747036, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI4504505, Length=255, Percent_Identity=27.843137254902, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI109715829, Length=249, Percent_Identity=26.5060240963855, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI44680136, Length=192, Percent_Identity=26.5625, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI44680133, Length=192, Percent_Identity=26.5625, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI17738292, Length=192, Percent_Identity=26.5625, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI302344755, Length=109, Percent_Identity=35.7798165137615, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI224922801, Length=169, Percent_Identity=31.3609467455621, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI20149619, Length=198, Percent_Identity=29.2929292929293, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI32455239, Length=179, Percent_Identity=32.4022346368715, Blast_Score=64, Evalue=9e-11,
Organism=Homo sapiens, GI5031765, Length=179, Percent_Identity=32.4022346368715, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI2367175, Length=249, Percent_Identity=39.3574297188755, Blast_Score=150, Evalue=9e-38,
Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=33.6065573770492, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=35.3413654618474, Blast_Score=127, Evalue=6e-31,
Organism=Escherichia coli, GI1789378, Length=246, Percent_Identity=35.3658536585366, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1787335, Length=243, Percent_Identity=33.3333333333333, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=32.2834645669291, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=29.3172690763052, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1789208, Length=252, Percent_Identity=30.1587301587302, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=30.6451612903226, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI2367365, Length=248, Percent_Identity=30.241935483871, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1786812, Length=254, Percent_Identity=28.740157480315, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788891, Length=246, Percent_Identity=29.6747967479675, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1789057, Length=254, Percent_Identity=24.8031496062992, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787526, Length=243, Percent_Identity=28.3950617283951, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786701, Length=207, Percent_Identity=31.8840579710145, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787545, Length=266, Percent_Identity=27.0676691729323, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=35.3174603174603, Blast_Score=140, Evalue=6e-34,
Organism=Caenorhabditis elegans, GI17560676, Length=255, Percent_Identity=34.5098039215686, Blast_Score=127, Evalue=5e-30,
Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=34.3873517786561, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=35.0943396226415, Blast_Score=117, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=29.6992481203008, Blast_Score=114, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=35.6275303643725, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=32.319391634981, Blast_Score=111, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17559104, Length=265, Percent_Identity=34.7169811320755, Blast_Score=111, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=32.9317269076305, Blast_Score=110, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=31.6793893129771, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=31.9391634980989, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=32.1285140562249, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=32.0754716981132, Blast_Score=104, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17538486, Length=263, Percent_Identity=30.4182509505703, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17562906, Length=269, Percent_Identity=29.7397769516729, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71994600, Length=247, Percent_Identity=30.7692307692308, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=29.7709923664122, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17531453, Length=269, Percent_Identity=29.7397769516729, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17565030, Length=265, Percent_Identity=31.6981132075472, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17562908, Length=269, Percent_Identity=28.996282527881, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=31.5589353612167, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17551412, Length=267, Percent_Identity=30.3370786516854, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=29.277566539924, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=28.4090909090909, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17508651, Length=250, Percent_Identity=29.6, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=27.4809160305344, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17536025, Length=249, Percent_Identity=27.710843373494, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17561272, Length=252, Percent_Identity=31.3492063492063, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17568967, Length=235, Percent_Identity=30.6382978723404, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17536651, Length=247, Percent_Identity=26.7206477732794, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17538182, Length=260, Percent_Identity=27.6923076923077, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71982365, Length=192, Percent_Identity=29.1666666666667, Blast_Score=67, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=246, Percent_Identity=27.6422764227642, Blast_Score=75, Evalue=8e-15,
Organism=Saccharomyces cerevisiae, GI6322861, Length=242, Percent_Identity=28.9256198347107, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6323882, Length=250, Percent_Identity=27.2, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322226, Length=187, Percent_Identity=27.2727272727273, Blast_Score=63, Evalue=5e-11,
Organism=Drosophila melanogaster, GI28571526, Length=256, Percent_Identity=39.84375, Blast_Score=150, Evalue=8e-37,
Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=38.8888888888889, Blast_Score=145, Evalue=2e-35,
Organism=Drosophila melanogaster, GI21357041, Length=253, Percent_Identity=36.7588932806324, Blast_Score=140, Evalue=9e-34,
Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=36.6935483870968, Blast_Score=139, Evalue=2e-33,
Organism=Drosophila melanogaster, GI24643142, Length=249, Percent_Identity=34.136546184739, Blast_Score=125, Evalue=4e-29,
Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=35.2, Blast_Score=121, Evalue=3e-28,
Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=32.8, Blast_Score=117, Evalue=5e-27,
Organism=Drosophila melanogaster, GI24644337, Length=214, Percent_Identity=34.1121495327103, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI17737361, Length=263, Percent_Identity=29.6577946768061, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24641232, Length=203, Percent_Identity=31.5270935960591, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI116007236, Length=203, Percent_Identity=30.0492610837438, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI18859837, Length=132, Percent_Identity=35.6060606060606, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24641388, Length=226, Percent_Identity=33.1858407079646, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI281364494, Length=245, Percent_Identity=29.3877551020408, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24663911, Length=240, Percent_Identity=26.6666666666667, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24648693, Length=204, Percent_Identity=31.8627450980392, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21355889, Length=204, Percent_Identity=31.8627450980392, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24580925, Length=204, Percent_Identity=26.4705882352941, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI116007234, Length=203, Percent_Identity=30.5418719211823, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI116007238, Length=190, Percent_Identity=29.4736842105263, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100

Molecular weight: Translated: 25171; Mature: 25040

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLANKVAIVTGGSKGIGAAIAKALAAEGASVVVNYASSKAGADAVVSAIVEAGGRAVA
CCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEE
VGGDVSKAADAQRIVDTAIDTYGRLDVLVNNSGVYEFGAIEAITEEHYRRQFDTNVFGVL
ECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHCCCHHHHH
LMTQAAVKHLGEGASIVNISSVVTSITPPASAVYSGTKGAVDAITGVLALELGPRKIRVN
HHHHHHHHHHCCCCCEEEHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHEEECCCEEEEE
AINPGMIVTEGTHSAGIIGSDLDKQVRSETPLGRLGEPDDIASVAVFLASDDARWMTGEH
EECCCEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHEEEEEECCCCCEECCCE
LVVSGGLN
EEEECCCC
>Mature Secondary Structure 
SKLANKVAIVTGGSKGIGAAIAKALAAEGASVVVNYASSKAGADAVVSAIVEAGGRAVA
CCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEE
VGGDVSKAADAQRIVDTAIDTYGRLDVLVNNSGVYEFGAIEAITEEHYRRQFDTNVFGVL
ECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHCCCHHHHH
LMTQAAVKHLGEGASIVNISSVVTSITPPASAVYSGTKGAVDAITGVLALELGPRKIRVN
HHHHHHHHHHCCCCCEEEHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHEEECCCEEEEE
AINPGMIVTEGTHSAGIIGSDLDKQVRSETPLGRLGEPDDIASVAVFLASDDARWMTGEH
EECCCEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHEEEEEECCCCCEECCCE
LVVSGGLN
EEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+

Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]