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The map label for this gene is nahR [H]

Identifier: 78065402

GI number: 78065402

Start: 845120

End: 846067

Strand: Reverse

Name: nahR [H]

Synonym: Bcep18194_A3928

Alternate gene names: 78065402

Gene position: 846067-845120 (Counterclockwise)

Preceding gene: 78065403

Following gene: 78065397

Centisome position: 22.9

GC content: 68.25

Gene sequence:

>948_bases
ATGGAAGAAGACGACCGTACCGCCTCGCTCGATATCTGGCTCGTGCGCGTGTTGCGCACGCTGCTGCTCGAGCGCAGCGT
CACGCAGGCCGCGCTGCGGCTGAACCAGACCCAGCCCGCGATCAGCACCGCGCTGCGCAAGCTGCGCGAGACGCTGAACG
ACCCGATCCTCGTGCGCGGCAAATCCGGAATGGTGCCGACCGAATACGGCGCGTCGCTGCTCGAAGCCGCGCAGCGCGCG
CTGCGCGAGGTCGACTTCATCGCGACGCCGCACGGCGACTTCGATCCGTCGTCCGCACGACGCACGTTCCGCGTCGCCGC
ACCCGATTACCTGAACGATTTCTTCATGCCGACGCTGATCGAGCGTTTTCGCGACGCGGCGCCGCATGCCCATCTGGAAA
TCGATTCGCTGAATCCCGCACTCGATCACGCGGGCGCGCTCGAATCGGGCGCGCTCGATCTCGTGATCGGCAACTGGCCG
AAGCCCGACCCGCAGTTCGCGCGCCAGGACCTGTTCTCCGACACGATCGTGTGCCTGATGCGCGATGCGCACCCGCTCGC
GCGCGTGCCGCTCACGCGCGAAGCGTACGCGTCGGCCGCGCACGTCGCGCCGACGCCGTACACCGGCGACAAGCGCAATG
CGATCGAGATCGGCCTCGCACGCGCACGCCTCACGCGACGCATCGTGACGACGCTGCCGTACTTCGGGATCGTGCCGCAG
GTGCTGCTGCAGTCGGACCTGATCTTCACGACGACGCGCCGCTTCGCGACGCACTACGCGCAGTTGCTGCCGCTCGTGGT
CGTCACGCCGCCCGTGCCGTTTCCGCGCATCAAGAGCTACCTGCTCACGCATCCGCAGCCCGACCGCCCGACCGACATCG
CGTGGCTGTGCGCGCTGATGCAGAGCGTGTCCGACGAGTTGACGGTGCCCCGCAGCCGCAAGCGCTGA

Upstream 100 bases:

>100_bases
GGATCAGCACGCTGCCGAAGGGCCGGCTGTGATGGCCGGTATCACGCACGCCAACGCGCGGCTGCGGTAAGGTTACGCTT
CCCCCGAATCACCCCCTACG

Downstream 100 bases:

>100_bases
GCCGCGGCACAACACGCGGCGCGGCCGCTCAGGCCGTGCAGAAGGTTTCCTGCAGATGGGTCCAGCGCACGACGCCCGCC
GTGTCGCGCTCGAACACGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MEEDDRTASLDIWLVRVLRTLLLERSVTQAALRLNQTQPAISTALRKLRETLNDPILVRGKSGMVPTEYGASLLEAAQRA
LREVDFIATPHGDFDPSSARRTFRVAAPDYLNDFFMPTLIERFRDAAPHAHLEIDSLNPALDHAGALESGALDLVIGNWP
KPDPQFARQDLFSDTIVCLMRDAHPLARVPLTREAYASAAHVAPTPYTGDKRNAIEIGLARARLTRRIVTTLPYFGIVPQ
VLLQSDLIFTTTRRFATHYAQLLPLVVVTPPVPFPRIKSYLLTHPQPDRPTDIAWLCALMQSVSDELTVPRSRKR

Sequences:

>Translated_315_residues
MEEDDRTASLDIWLVRVLRTLLLERSVTQAALRLNQTQPAISTALRKLRETLNDPILVRGKSGMVPTEYGASLLEAAQRA
LREVDFIATPHGDFDPSSARRTFRVAAPDYLNDFFMPTLIERFRDAAPHAHLEIDSLNPALDHAGALESGALDLVIGNWP
KPDPQFARQDLFSDTIVCLMRDAHPLARVPLTREAYASAAHVAPTPYTGDKRNAIEIGLARARLTRRIVTTLPYFGIVPQ
VLLQSDLIFTTTRRFATHYAQLLPLVVVTPPVPFPRIKSYLLTHPQPDRPTDIAWLCALMQSVSDELTVPRSRKR
>Mature_315_residues
MEEDDRTASLDIWLVRVLRTLLLERSVTQAALRLNQTQPAISTALRKLRETLNDPILVRGKSGMVPTEYGASLLEAAQRA
LREVDFIATPHGDFDPSSARRTFRVAAPDYLNDFFMPTLIERFRDAAPHAHLEIDSLNPALDHAGALESGALDLVIGNWP
KPDPQFARQDLFSDTIVCLMRDAHPLARVPLTREAYASAAHVAPTPYTGDKRNAIEIGLARARLTRRIVTTLPYFGIVPQ
VLLQSDLIFTTTRRFATHYAQLLPLVVVTPPVPFPRIKSYLLTHPQPDRPTDIAWLCALMQSVSDELTVPRSRKR

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=300, Percent_Identity=25.6666666666667, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081766, Length=275, Percent_Identity=24, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1790147, Length=292, Percent_Identity=25.6849315068493, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35281; Mature: 35281

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEDDRTASLDIWLVRVLRTLLLERSVTQAALRLNQTQPAISTALRKLRETLNDPILVRG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEC
KSGMVPTEYGASLLEAAQRALREVDFIATPHGDFDPSSARRTFRVAAPDYLNDFFMPTLI
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHHH
ERFRDAAPHAHLEIDSLNPALDHAGALESGALDLVIGNWPKPDPQFARQDLFSDTIVCLM
HHHHHCCCCCEEEECCCCHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
RDAHPLARVPLTREAYASAAHVAPTPYTGDKRNAIEIGLARARLTRRIVTTLPYFGIVPQ
HCCCCHHHCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
VLLQSDLIFTTTRRFATHYAQLLPLVVVTPPVPFPRIKSYLLTHPQPDRPTDIAWLCALM
HHHHCCHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHH
QSVSDELTVPRSRKR
HHHHHHCCCCCCCCC
>Mature Secondary Structure
MEEDDRTASLDIWLVRVLRTLLLERSVTQAALRLNQTQPAISTALRKLRETLNDPILVRG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEC
KSGMVPTEYGASLLEAAQRALREVDFIATPHGDFDPSSARRTFRVAAPDYLNDFFMPTLI
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHHH
ERFRDAAPHAHLEIDSLNPALDHAGALESGALDLVIGNWPKPDPQFARQDLFSDTIVCLM
HHHHHCCCCCEEEECCCCHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
RDAHPLARVPLTREAYASAAHVAPTPYTGDKRNAIEIGLARARLTRRIVTTLPYFGIVPQ
HCCCCHHHCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
VLLQSDLIFTTTRRFATHYAQLLPLVVVTPPVPFPRIKSYLLTHPQPDRPTDIAWLCALM
HHHHCCHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHH
QSVSDELTVPRSRKR
HHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]