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The map label for this gene is nodD2 [H]

Identifier: 78065265

GI number: 78065265

Start: 685006

End: 685926

Strand: Reverse

Name: nodD2 [H]

Synonym: Bcep18194_A3789

Alternate gene names: 78065265

Gene position: 685926-685006 (Counterclockwise)

Preceding gene: 78065267

Following gene: 78065261

Centisome position: 18.57

GC content: 72.75

Gene sequence:

>921_bases
ATGAATGCAGATGATATCGCCGGCCTCGACCTGAACCTGCTGAAAGTGTTCGAGGCGCTGTACGAGGAAGGCGGCGCGAG
CCGCGCGGCGCTGCGGCTCGGTCTCACGCAGTCGGCGGTGAGCGCGGCGCTGGCGCGGCTGCGCGTGATCTATGCCGATC
CGCTGTTCGTGCGCACCGGCCGCGGGCTCGCGCCGACGCCGCGCGCGGACGAACTGAAGCCGATCCTGTCCGACGCGCTC
GACCGTTGCCGCGAAAGCCTCGCGATCGCGGCCGACGGCGGCGACCGCATCGGCCGCACGATCTCGATCGGGCTGTCGGA
CGACTTCGAGATCGCGCTCGGCCGCGCGCTGATCGACGCCGTCGCGCGGGAAGCCGGCGGCATCCGGTTGATCTTCCGGC
AGACGCACAGCGGCATCGCCGGCGACGCGTTGCTGCGCCACGGCGTCGACCTCGCGATCGCATCCGGCGGCTTCTCGGCG
AACGGGCTCAGCCGGCGCGCGGTCGCGACGGGCGGCTATGCGTGCCTGATCGACCCGGCCGCCCGCGAGCGGGCGCCGCG
CACGCTGACGCTCGCCGATTTCCTGCGGCGCGACCACCTGCTCGTGTCGTCGGGCGGCGTGATCGGGATCGTCGACGAGG
CGCTGGCCCCGCTCGGCCACAAGCGGCGCGTCGCGGCGTCGACCACGCATTTCGCCGCGTTGCCGTACCTGCTCGCCGGC
TCCGACGCGGTCGCGACGATTCCCGCGCACGCGGCACGCGCAATCGCGCAATCCACCCCGTTGCGCGCGCTCGCCTGCCC
GGTCGACTTGCCGCACTACCCGGTGGAAATCGGCTGGCGCACGAGCACGCAGCGCGACCCGGCGATCGTGCGCGTCCGCG
ACACGATCGCCGCGTGCGTCGCGAATCTGGTCGCACCATGA

Upstream 100 bases:

>100_bases
GCGATGACTGACATGGACATGGAGGCGTCTCCGGTGAATGGGGTAACGCCATCTTTATCGATATGATGTCATCGATCAAA
TCGATAGAACGATAAGTGTC

Downstream 100 bases:

>100_bases
AAAAGACCCGGCCGGCTTGCGCCGGTCGGGCCTGTCCGGTCACAGGCTGCCCGGAAGTCGAAGCAGGCAGCCGCGTCGCT
CGTGCGTGCGAGCGTGCGTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MNADDIAGLDLNLLKVFEALYEEGGASRAALRLGLTQSAVSAALARLRVIYADPLFVRTGRGLAPTPRADELKPILSDAL
DRCRESLAIAADGGDRIGRTISIGLSDDFEIALGRALIDAVAREAGGIRLIFRQTHSGIAGDALLRHGVDLAIASGGFSA
NGLSRRAVATGGYACLIDPAARERAPRTLTLADFLRRDHLLVSSGGVIGIVDEALAPLGHKRRVAASTTHFAALPYLLAG
SDAVATIPAHAARAIAQSTPLRALACPVDLPHYPVEIGWRTSTQRDPAIVRVRDTIAACVANLVAP

Sequences:

>Translated_306_residues
MNADDIAGLDLNLLKVFEALYEEGGASRAALRLGLTQSAVSAALARLRVIYADPLFVRTGRGLAPTPRADELKPILSDAL
DRCRESLAIAADGGDRIGRTISIGLSDDFEIALGRALIDAVAREAGGIRLIFRQTHSGIAGDALLRHGVDLAIASGGFSA
NGLSRRAVATGGYACLIDPAARERAPRTLTLADFLRRDHLLVSSGGVIGIVDEALAPLGHKRRVAASTTHFAALPYLLAG
SDAVATIPAHAARAIAQSTPLRALACPVDLPHYPVEIGWRTSTQRDPAIVRVRDTIAACVANLVAP
>Mature_306_residues
MNADDIAGLDLNLLKVFEALYEEGGASRAALRLGLTQSAVSAALARLRVIYADPLFVRTGRGLAPTPRADELKPILSDAL
DRCRESLAIAADGGDRIGRTISIGLSDDFEIALGRALIDAVAREAGGIRLIFRQTHSGIAGDALLRHGVDLAIASGGFSA
NGLSRRAVATGGYACLIDPAARERAPRTLTLADFLRRDHLLVSSGGVIGIVDEALAPLGHKRRVAASTTHFAALPYLLAG
SDAVATIPAHAARAIAQSTPLRALACPVDLPHYPVEIGWRTSTQRDPAIVRVRDTIAACVANLVAP

Specific function: NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081766, Length=301, Percent_Identity=28.2392026578073, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87081684, Length=150, Percent_Identity=31.3333333333333, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1786820, Length=65, Percent_Identity=50.7692307692308, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32050; Mature: 32050

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNADDIAGLDLNLLKVFEALYEEGGASRAALRLGLTQSAVSAALARLRVIYADPLFVRTG
CCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHEECCHHHHHHHHHHHHHHEEECCEEEECC
RGLAPTPRADELKPILSDALDRCRESLAIAADGGDRIGRTISIGLSDDFEIALGRALIDA
CCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHH
VAREAGGIRLIFRQTHSGIAGDALLRHGVDLAIASGGFSANGLSRRAVATGGYACLIDPA
HHHHCCCEEEEEEECCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCEEECCCEEEEECCH
ARERAPRTLTLADFLRRDHLLVSSGGVIGIVDEALAPLGHKRRVAASTTHFAALPYLLAG
HHHCCCCEEHHHHHHHHCCEEEECCCEEEEHHHHHCCCCCCCCHHCCCHHHHHHHHHHCC
SDAVATIPAHAARAIAQSTPLRALACPVDLPHYPVEIGWRTSTQRDPAIVRVRDTIAACV
CCCEEECHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCCCCCCCEEEEEHHHHHHHH
ANLVAP
HHHCCC
>Mature Secondary Structure
MNADDIAGLDLNLLKVFEALYEEGGASRAALRLGLTQSAVSAALARLRVIYADPLFVRTG
CCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHEECCHHHHHHHHHHHHHHEEECCEEEECC
RGLAPTPRADELKPILSDALDRCRESLAIAADGGDRIGRTISIGLSDDFEIALGRALIDA
CCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHH
VAREAGGIRLIFRQTHSGIAGDALLRHGVDLAIASGGFSANGLSRRAVATGGYACLIDPA
HHHHCCCEEEEEEECCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCEEECCCEEEEECCH
ARERAPRTLTLADFLRRDHLLVSSGGVIGIVDEALAPLGHKRRVAASTTHFAALPYLLAG
HHHCCCCEEHHHHHHHHCCEEEECCCEEEEHHHHHCCCCCCCCHHCCCHHHHHHHHHHCC
SDAVATIPAHAARAIAQSTPLRALACPVDLPHYPVEIGWRTSTQRDPAIVRVRDTIAACV
CCCEEECHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCCCCCCCEEEEEHHHHHHHH
ANLVAP
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2826389 [H]