Click here to switch to the map view.

The map label for this gene is yfjD [H]

Identifier: 78065140

GI number: 78065140

Start: 550382

End: 551674

Strand: Reverse

Name: yfjD [H]

Synonym: Bcep18194_A3664

Alternate gene names: 78065140

Gene position: 551674-550382 (Counterclockwise)

Preceding gene: 78065141

Following gene: 78065139

Centisome position: 14.93

GC content: 63.19

Gene sequence:

>1293_bases
GTGGACCAAATTCCCTTATGGGCGCAAATCGGCGCCGTCTTCCTGCTTCTCCTCTGTTCCAGCTTCTTTTCGATTTCCGA
GACCGCGATGATGGCGCTCAACCGCCATCGGCTGAAGCATCTCGCCAGCCAGGGCGCACTCGGCGCGAAAACCACGCAAG
GCCTGCTCACGCGCACTGACCTGCTGCTCAGCGTGATCCTGATCGGCAACAACCTGTTCAACACGATCATCCCGGTCCTG
ACGACATCGCTCGCGCTGCATACGTTCGGCCGCAACAACGTCGCGCTGTCGATCGCGACCGGTATCGTCGCGTTCCTGAT
CATCGTGTTCGCCGAAATCGCGCCGAAGATCGTCGGCGCGACGTTCCCTGAACGCATCGCGCTGCCTGCGAGCCTCGTGA
TCGCGCCGCTGATGCGCGTGTTCAAGCCGGTCGTCTGGTTCGTCAACGCACTCGCGCACGGCGTGCTGCGCGTGCTGCGC
ATCAATACGGCGAAGGGTCGCGACCAGCGGATGTCGGCCGACGAGCTGCGCGCGATCGTGCTCGAATCGAGCAGCTTCAT
GCCGACCAAACACCGCAGCATCCTGCTCAACCTGTTCGACCTCGAGAACATCACGGTCGACGACGTGATGGTGCCGCGCC
GCCAGATCGAGTCGCTCAACTTCTACGCACCGCTCGACGACGTCCTGCACCAGCTCGAAACCTGCTATCACAACCGACTC
GTCGTCTACGAAGGCGACATCGACAAGGTGCTCGGCGTGCTGCACGTCCGCAAGACGCTGACCGCGCTGCACAACCAGGA
GTTCGACCGCGAGACGCTGCGCACGCTGCTCGCCGAACCGTACTACGTGCCGTCCGGCACGCCGGTGGTGCAGCAGCTCC
AGTTTTTCCAGGAAACGCGGCAGCGGACCGCGCTCGTCGTCAACGAGTACGGCGAGCTCGAAGGGCTCGTCACGCCCGAA
GACATCATCGAGGAGCTGATCGGCGAATTCACCACGTCGATGCCGCGCAGCGAACGCAAGGGCGGCTGGGACGACAACGG
CGAATGCATCGTCTCGGCAAGCATGCCGCTGCGCGAACTGAATCGCTGGCTGCACCTGAAGCTGCCGACCGACGGGCCGA
AGACGCTGAACGGCCTGGTGCTCGAAATCCTCGAGGAAATTCCGGAAGACGACGTGTGCCTGAAAATCGGTGACGTGATG
CTTGAAGTGATGCGCAGCGACGATCAGGCCGTGCGCACCGTCAAGCTCTTCAAGCCGCGCGGCTCGCGCACCGCACGCGT
CACCTCCCGCTAG

Upstream 100 bases:

>100_bases
GCCCGGTCGCCGCAGGCCCCTCGTGTCGCGCACGACACATCGCGGTCGCCGGCCTCTGCTATATTCCTTCCATCCCTGTC
CCTCACTGCCCTTCCGACGC

Downstream 100 bases:

>100_bases
CCGAACGGCTGACTGCCAGCGCCGCCCGCGACGCGCGACCATCTGCTGGTCACGGTCAACAGGCGGCCAGCGTGCCGGCT
CACATGCATTTCCCTCCTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MDQIPLWAQIGAVFLLLLCSSFFSISETAMMALNRHRLKHLASQGALGAKTTQGLLTRTDLLLSVILIGNNLFNTIIPVL
TTSLALHTFGRNNVALSIATGIVAFLIIVFAEIAPKIVGATFPERIALPASLVIAPLMRVFKPVVWFVNALAHGVLRVLR
INTAKGRDQRMSADELRAIVLESSSFMPTKHRSILLNLFDLENITVDDVMVPRRQIESLNFYAPLDDVLHQLETCYHNRL
VVYEGDIDKVLGVLHVRKTLTALHNQEFDRETLRTLLAEPYYVPSGTPVVQQLQFFQETRQRTALVVNEYGELEGLVTPE
DIIEELIGEFTTSMPRSERKGGWDDNGECIVSASMPLRELNRWLHLKLPTDGPKTLNGLVLEILEEIPEDDVCLKIGDVM
LEVMRSDDQAVRTVKLFKPRGSRTARVTSR

Sequences:

>Translated_430_residues
MDQIPLWAQIGAVFLLLLCSSFFSISETAMMALNRHRLKHLASQGALGAKTTQGLLTRTDLLLSVILIGNNLFNTIIPVL
TTSLALHTFGRNNVALSIATGIVAFLIIVFAEIAPKIVGATFPERIALPASLVIAPLMRVFKPVVWFVNALAHGVLRVLR
INTAKGRDQRMSADELRAIVLESSSFMPTKHRSILLNLFDLENITVDDVMVPRRQIESLNFYAPLDDVLHQLETCYHNRL
VVYEGDIDKVLGVLHVRKTLTALHNQEFDRETLRTLLAEPYYVPSGTPVVQQLQFFQETRQRTALVVNEYGELEGLVTPE
DIIEELIGEFTTSMPRSERKGGWDDNGECIVSASMPLRELNRWLHLKLPTDGPKTLNGLVLEILEEIPEDDVCLKIGDVM
LEVMRSDDQAVRTVKLFKPRGSRTARVTSR
>Mature_430_residues
MDQIPLWAQIGAVFLLLLCSSFFSISETAMMALNRHRLKHLASQGALGAKTTQGLLTRTDLLLSVILIGNNLFNTIIPVL
TTSLALHTFGRNNVALSIATGIVAFLIIVFAEIAPKIVGATFPERIALPASLVIAPLMRVFKPVVWFVNALAHGVLRVLR
INTAKGRDQRMSADELRAIVLESSSFMPTKHRSILLNLFDLENITVDDVMVPRRQIESLNFYAPLDDVLHQLETCYHNRL
VVYEGDIDKVLGVLHVRKTLTALHNQEFDRETLRTLLAEPYYVPSGTPVVQQLQFFQETRQRTALVVNEYGELEGLVTPE
DIIEELIGEFTTSMPRSERKGGWDDNGECIVSASMPLRELNRWLHLKLPTDGPKTLNGLVLEILEEIPEDDVCLKIGDVM
LEVMRSDDQAVRTVKLFKPRGSRTARVTSR

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=346, Percent_Identity=24.5664739884393, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI40068055, Length=338, Percent_Identity=25.4437869822485, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI40068053, Length=338, Percent_Identity=25.4437869822485, Blast_Score=73, Evalue=4e-13,
Organism=Escherichia coli, GI145693175, Length=399, Percent_Identity=39.8496240601504, Blast_Score=313, Evalue=1e-86,
Organism=Escherichia coli, GI1790664, Length=420, Percent_Identity=24.5238095238095, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI87082033, Length=272, Percent_Identity=27.9411764705882, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1786879, Length=258, Percent_Identity=24.8062015503876, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1788119, Length=234, Percent_Identity=23.5042735042735, Blast_Score=69, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 48168; Mature: 48168

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQIPLWAQIGAVFLLLLCSSFFSISETAMMALNRHRLKHLASQGALGAKTTQGLLTRTD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
LLLSVILIGNNLFNTIIPVLTTSLALHTFGRNNVALSIATGIVAFLIIVFAEIAPKIVGA
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCC
TFPERIALPASLVIAPLMRVFKPVVWFVNALAHGVLRVLRINTAKGRDQRMSADELRAIV
CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
LESSSFMPTKHRSILLNLFDLENITVDDVMVPRRQIESLNFYAPLDDVLHQLETCYHNRL
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCHHHHHCCCCCCCHHHHHHHHHHHHHCCE
VVYEGDIDKVLGVLHVRKTLTALHNQEFDRETLRTLLAEPYYVPSGTPVVQQLQFFQETR
EEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
QRTALVVNEYGELEGLVTPEDIIEELIGEFTTSMPRSERKGGWDDNGECIVSASMPLREL
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHC
NRWLHLKLPTDGPKTLNGLVLEILEEIPEDDVCLKIGDVMLEVMRSDDQAVRTVKLFKPR
CCEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHEECCC
GSRTARVTSR
CCCCCCCCCC
>Mature Secondary Structure
MDQIPLWAQIGAVFLLLLCSSFFSISETAMMALNRHRLKHLASQGALGAKTTQGLLTRTD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
LLLSVILIGNNLFNTIIPVLTTSLALHTFGRNNVALSIATGIVAFLIIVFAEIAPKIVGA
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCC
TFPERIALPASLVIAPLMRVFKPVVWFVNALAHGVLRVLRINTAKGRDQRMSADELRAIV
CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
LESSSFMPTKHRSILLNLFDLENITVDDVMVPRRQIESLNFYAPLDDVLHQLETCYHNRL
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCHHHHHCCCCCCCHHHHHHHHHHHHHCCE
VVYEGDIDKVLGVLHVRKTLTALHNQEFDRETLRTLLAEPYYVPSGTPVVQQLQFFQETR
EEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
QRTALVVNEYGELEGLVTPEDIIEELIGEFTTSMPRSERKGGWDDNGECIVSASMPLREL
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHC
NRWLHLKLPTDGPKTLNGLVLEILEEIPEDDVCLKIGDVMLEVMRSDDQAVRTVKLFKPR
CCEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHEECCC
GSRTARVTSR
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]