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The map label for this gene is rlpA [C]

Identifier: 78064866

GI number: 78064866

Start: 248700

End: 249344

Strand: Direct

Name: rlpA [C]

Synonym: Bcep18194_A3389

Alternate gene names: 78064866

Gene position: 248700-249344 (Clockwise)

Preceding gene: 78064862

Following gene: 78064868

Centisome position: 6.73

GC content: 64.96

Gene sequence:

>645_bases
ATGAAGGAGCGGCCCGAACCAGAAGGCGACACGTCGATGAATTTACGTTTTCCGAGTCGATTCGGGACCATTGCATTGTT
TTTTGCGCTGACGGGCTGTGCGGTGCCACCCAGCCAGACCACCGGTAGCGCGAACCAGAAGAACGCCGTCGACAAGACGG
CCGCCGCCGCGAAGGCGGATAGCGACAAGCAGCTGAATTTTGATTCCGCGCTGGCGTCGATGCCGGCTGCCGACAGCAAG
GACGCGAAGAAGTCGTCGCTGGCGGACGCCGAGCCGATCGACGGCAAGGATGTATCCGATTTCCGCCAGACGGGCCGCGC
CTCGTGGTACGGGCGGGATTTCCACGGCCGCCGCACCGCGAACGGCGAGCGCTTCAACATGAACGCGCTCACCGCCGCGC
ACCGCACGCTGCCGCTGTCGTCGTACATCAAGGTGACGAACGCGTCGACCGGCAAGTGGGTCGTCGTGAAGGTCAACGAT
CGCGGGCCGTACAAGCGCGGCCGCGTGCTCGACCTGTCGTATGCGGCCGCGAAGCTGATCGGCCTCGTGCACGCCGGCAC
CGGCCGCGTGAAGATCGAAGGGCTGTCGCCGCAGGAAGCGCGCGAGGCACGCGACGAAATGTTCGCGTCGATCTCGGCGA
AGTAA

Upstream 100 bases:

>100_bases
TAGACGAAGGCTGCGCCCATGCAAGCCGCCTGCTCGTATCCGAGCGGGGCGTGCACGCATTTGCCGTCCGGGCCGCATAT
CTGCGCTGTGAATCGGCGTG

Downstream 100 bases:

>100_bases
CGCAGCGGATCGACCGCTCATGCAAAAGGGCTGCCCTCGGGCAGCCCTTTGTCTTTCCGGCACCGCGCGATGCCGGCGCC
GGTTTCCCGGTGCCGGCCCG

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MKERPEPEGDTSMNLRFPSRFGTIALFFALTGCAVPPSQTTGSANQKNAVDKTAAAAKADSDKQLNFDSALASMPAADSK
DAKKSSLADAEPIDGKDVSDFRQTGRASWYGRDFHGRRTANGERFNMNALTAAHRTLPLSSYIKVTNASTGKWVVVKVND
RGPYKRGRVLDLSYAAAKLIGLVHAGTGRVKIEGLSPQEAREARDEMFASISAK

Sequences:

>Translated_214_residues
MKERPEPEGDTSMNLRFPSRFGTIALFFALTGCAVPPSQTTGSANQKNAVDKTAAAAKADSDKQLNFDSALASMPAADSK
DAKKSSLADAEPIDGKDVSDFRQTGRASWYGRDFHGRRTANGERFNMNALTAAHRTLPLSSYIKVTNASTGKWVVVKVND
RGPYKRGRVLDLSYAAAKLIGLVHAGTGRVKIEGLSPQEAREARDEMFASISAK
>Mature_214_residues
MKERPEPEGDTSMNLRFPSRFGTIALFFALTGCAVPPSQTTGSANQKNAVDKTAAAAKADSDKQLNFDSALASMPAADSK
DAKKSSLADAEPIDGKDVSDFRQTGRASWYGRDFHGRRTANGERFNMNALTAAHRTLPLSSYIKVTNASTGKWVVVKVND
RGPYKRGRVLDLSYAAAKLIGLVHAGTGRVKIEGLSPQEAREARDEMFASISAK

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=82, Percent_Identity=48.780487804878, Blast_Score=84, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 23054; Mature: 23054

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKERPEPEGDTSMNLRFPSRFGTIALFFALTGCAVPPSQTTGSANQKNAVDKTAAAAKAD
CCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
SDKQLNFDSALASMPAADSKDAKKSSLADAEPIDGKDVSDFRQTGRASWYGRDFHGRRTA
CCCCCCHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
NGERFNMNALTAAHRTLPLSSYIKVTNASTGKWVVVKVNDRGPYKRGRVLDLSYAAAKLI
CCCEEEHHHHHHHHHHCCHHHHEEEECCCCCCEEEEEECCCCCCCCCCEEEHHHHHHHHH
GLVHAGTGRVKIEGLSPQEAREARDEMFASISAK
HHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKERPEPEGDTSMNLRFPSRFGTIALFFALTGCAVPPSQTTGSANQKNAVDKTAAAAKAD
CCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
SDKQLNFDSALASMPAADSKDAKKSSLADAEPIDGKDVSDFRQTGRASWYGRDFHGRRTA
CCCCCCHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
NGERFNMNALTAAHRTLPLSSYIKVTNASTGKWVVVKVNDRGPYKRGRVLDLSYAAAKLI
CCCEEEHHHHHHHHHHCCHHHHEEEECCCCCCEEEEEECCCCCCCCCCEEEHHHHHHHHH
GLVHAGTGRVKIEGLSPQEAREARDEMFASISAK
HHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]