Click here to switch to the map view.

The map label for this gene is 78049796

Identifier: 78049796

GI number: 78049796

Start: 4869555

End: 4870349

Strand: Reverse

Name: 78049796

Synonym: XCV4240

Alternate gene names: NA

Gene position: 4870349-4869555 (Counterclockwise)

Preceding gene: 78049797

Following gene: 78049795

Centisome position: 94.05

GC content: 66.92

Gene sequence:

>795_bases
ATGGATGCCACCGCACAGACCCTGCTGGCCCAAGGCGAGCCGGCGCAGGCGTTGCAGCAACTGATCCAGCAGGTGCGCCG
GCAACCGGCCGATGCAGCGCAGCGCGTGTTCCTGTTTCAGTTGCTGGCCGTCCTCGGGCAGTGGTCGCGCGCCGCAGATC
AGCTGCGCGCCTGCGCTGAACTGGATGCCGCCACGCTGCCCTTGGTGCAGACGTACCTTGCAGTGCTGCAGGGCGAACAG
ACGCGCGCCGAGGTGTTTGCCGGCGCGCGATTGCCGCATGTGATCGGTGAGTCGGCCGAATGGTTGGCGATGCATCTACA
CGCGCTGCAACTGTCGGCGCAAGGGCGTGGCGAACAAGCAGCTGCGTTGCGGACGCAAGCGTTCGAGTTGGCACCGGCTA
GTGCCGGCGTGCTCGATGGCGAACGCTTCCAGTGGCTCGCAGATGCCGATACCCGTTTCGGACCCTGCATCGAGCTCATG
CTCGACAGCGGCTACGCCTGGGCACCGCTCAGCCACATCCAGCAGTTACGCATGCAAGCGCCGCTGGATCTGCGCGACAC
CGTGTGGGCGCCGGTGAGCGTGCTATGGCGCAACGGCGGCCAGGCCTTCGGCTACCTGCCGGTGCGTTACCCCGGCAGCG
AGCACCTGGATGCCGGCGAGCTGCAATTGGCGCGCCGCACCGAATGGACCCACGGCACGCAGGGCGAAATCGGCCTGGGC
CAGCGCATGTGGAGCACAGAGTCGCACGAGATTGCGCTGCTCGATGTGCGTGACGTGCAGTTCGACGCGGACTGA

Upstream 100 bases:

>100_bases
GAAGTTGACGCTTTGACGTTGGCTGCCTCCGATGGCGGCAATGCAATGACGGGCGGTGCCGCGCACGGCACCGCCACCTT
CTTCGATAAGGAACCACGCG

Downstream 100 bases:

>100_bases
TTTCAATGGCCGAACTCACCACTACCGAACGCTTGCAGCCTTCGCTACTGGACCGGCTCACCGATGCCGCGCCCAGCCAG
CGCGAAGAGAGCCGCGAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: ImpE Family Protein; Cytoplasmic Protein; Type VI Secretion System Protein ImpE; SciE Type Virulence Protein; ImpE-Like Protein; Avirulence Locus Protein; Virulence Protein SciE Type Family Protein; ImpE Family T6SS E; ImpE Protein Superfamily Protein; Secretion Protein; ImpE Protein; Cytoplasmic Protein SciE; Protein Of Avirulence Locus ImpE

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MDATAQTLLAQGEPAQALQQLIQQVRRQPADAAQRVFLFQLLAVLGQWSRAADQLRACAELDAATLPLVQTYLAVLQGEQ
TRAEVFAGARLPHVIGESAEWLAMHLHALQLSAQGRGEQAAALRTQAFELAPASAGVLDGERFQWLADADTRFGPCIELM
LDSGYAWAPLSHIQQLRMQAPLDLRDTVWAPVSVLWRNGGQAFGYLPVRYPGSEHLDAGELQLARRTEWTHGTQGEIGLG
QRMWSTESHEIALLDVRDVQFDAD

Sequences:

>Translated_264_residues
MDATAQTLLAQGEPAQALQQLIQQVRRQPADAAQRVFLFQLLAVLGQWSRAADQLRACAELDAATLPLVQTYLAVLQGEQ
TRAEVFAGARLPHVIGESAEWLAMHLHALQLSAQGRGEQAAALRTQAFELAPASAGVLDGERFQWLADADTRFGPCIELM
LDSGYAWAPLSHIQQLRMQAPLDLRDTVWAPVSVLWRNGGQAFGYLPVRYPGSEHLDAGELQLARRTEWTHGTQGEIGLG
QRMWSTESHEIALLDVRDVQFDAD
>Mature_264_residues
MDATAQTLLAQGEPAQALQQLIQQVRRQPADAAQRVFLFQLLAVLGQWSRAADQLRACAELDAATLPLVQTYLAVLQGEQ
TRAEVFAGARLPHVIGESAEWLAMHLHALQLSAQGRGEQAAALRTQAFELAPASAGVLDGERFQWLADADTRFGPCIELM
LDSGYAWAPLSHIQQLRMQAPLDLRDTVWAPVSVLWRNGGQAFGYLPVRYPGSEHLDAGELQLARRTEWTHGTQGEIGLG
QRMWSTESHEIALLDVRDVQFDAD

Specific function: Unknown

COG id: COG4455

COG function: function code R; Protein of avirulence locus involved in temperature-dependent protein secretion

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29083; Mature: 29083

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDATAQTLLAQGEPAQALQQLIQQVRRQPADAAQRVFLFQLLAVLGQWSRAADQLRACAE
CCCHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LDAATLPLVQTYLAVLQGEQTRAEVFAGARLPHVIGESAEWLAMHLHALQLSAQGRGEQA
HCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCHH
AALRTQAFELAPASAGVLDGERFQWLADADTRFGPCIELMLDSGYAWAPLSHIQQLRMQA
HHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHC
PLDLRDTVWAPVSVLWRNGGQAFGYLPVRYPGSEHLDAGELQLARRTEWTHGTQGEIGLG
CCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
QRMWSTESHEIALLDVRDVQFDAD
HHHCCCCCCCEEEEEEECCEECCC
>Mature Secondary Structure
MDATAQTLLAQGEPAQALQQLIQQVRRQPADAAQRVFLFQLLAVLGQWSRAADQLRACAE
CCCHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LDAATLPLVQTYLAVLQGEQTRAEVFAGARLPHVIGESAEWLAMHLHALQLSAQGRGEQA
HCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCHH
AALRTQAFELAPASAGVLDGERFQWLADADTRFGPCIELMLDSGYAWAPLSHIQQLRMQA
HHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHC
PLDLRDTVWAPVSVLWRNGGQAFGYLPVRYPGSEHLDAGELQLARRTEWTHGTQGEIGLG
CCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
QRMWSTESHEIALLDVRDVQFDAD
HHHCCCCCCCEEEEEEECCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA