| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is nrdA [H]
Identifier: 78049717
GI number: 78049717
Start: 4758678
End: 4761176
Strand: Reverse
Name: nrdA [H]
Synonym: XCV4161
Alternate gene names: 78049717
Gene position: 4761176-4758678 (Counterclockwise)
Preceding gene: 78049718
Following gene: 78049716
Centisome position: 91.94
GC content: 63.03
Gene sequence:
>2499_bases ATGACCACCAACGACACCCTTTCCGCGATCGCCGCCGGTACCGCAACACCCACCAGCGTTCCCGCCAGCGTTGCCGCGCC CGCCTGCGGCGCGCCGGAATTGACCGACCCGTCGGACATCGTGCCGCCTCCCCGCCAAGCCATTGCAATGCACGCACAGA CCATCGAAGAACAAAACGTCTCCACCTGGATCACGAAAGAAGCGGGCAATCGCAAGATTCCGTTCGAGCCGGAGCGCCTG AATCGCGCCATCGACCAGATCCATGCCGAGTTCCCGCAGCTGGACGTGGCCGATTACAAGCGCTCGGTGTTCGGGTTTGT CGAGCGCAAGGACAGCGTCAACGCCGACGACCTGGTCGACCACCTGATCCGTGAGGCCGAAGCGCGCGTCGACCTGACCA CCCCGGAGTGGGAGCACTTCGCTGCGCGTCTGTATTTGCGCCGCCTGTACAAGCGCGCCAGCCGCAACCGTTTCTACGAC GCCAGCCAGAAGTACGGCTCGTTCGTCGGCCTGCAGGAGAGCCTGGCCGACCGCAATGTCTATTCCAACGACATCCTGCG CCGCTATTCCAAGGACGAGCTGATCGAAGCCGGCAAGATGATCGAGCCCGAGCGCGACAAGCTGTTCGCCTACAACGGCC TGTACCTGCTGGCCACGCGTTACCTGGCCACCGATAGCTCGCGCGGTGTGTTCGAACTGCCGCAGGAGCGTTGGCTGACG ATCGCGCTGTACCTGATGCAGGACGAGATCGGCACCGGCAAGGGCAGCCGCGAGCGCCGCATGCAGCTGGTGGGCGAGGC CTACTGGGCGCTGTCCAACCTGTACATGACGGTGGCCACGCCGACGCTGGCCAATGCCGGCAAGGTCGGCGGCCAGCTGT CGAGCTGCTTCATCGACACCGTCGACGACAGCCTGCAGGGCATCTACGACTCCAATACCGACGTGGCGCGCGTGTCCAAG CACGGCGGCGGCGTGGGCGCCTACCTGGGCTATGTGCGTTCGTCGGGTTCGGCGATCCGCGGCGTGTCCAACTCGTCCGG CGGCGTGGTGCCGTGGATCAAGCAGCTCAACAACACCGCCGTGTCGGTGGACCAGCTGGGCCAGCGCAAGGGCGCCATCG CGGTCTACCTGGACATCTTCCACCGCGACATCGAAGCGTTCCTGGACCTGCGCCTGAACAACGGCGACCAGCGCCTGCGC GCGCACGACGTGTTCACCTCGGTGTGCATCCCCGACCTGTTCATGGAAGCGGTCGAGCGCCGCGGCGACTGGTACCTGTT CGACCCGCACGAAGTGAAGCGGATCAAGGGTTGGTACCTGCAGGACTTCTATGACGAGAAGAAGGGCGACGCCAACGGCA GCTTCCGTCGCAAGTACGAAGAAGTCGTCGCCGACGAGCGCATCACGCGCAAGACCGTCAAGGCGATCGAGATCTTCAAG CGCATCATGGTCAGCCAGCTGGAAACCGGCAACCCGTTCATGTTCTATCGCGATGAAGTCAATCGCAAGAACCCGAACAA GCACGAGGGCATGGTCTATTCGTCCAACCTGTGCACCGAGATCCTGCAGAACATGAGCCCGACGCGGATGATGCAGGAGA TCATCAGCGGCAATCAGATCGTCACCACCAAGAAGGCGGGCGATTTCGTCGTGTGTAACCTGTCCTCGATCAACCTGGGC CGCGCGATCACCGTGCAGGCCGACCAGGCCGATCTGCTGGGCGCCGACGTGCTGGAGCGCCTGATCCCGATCCAGGTGCG CATGCTCGACAACGTGATCGATCTGAACCAGTTGCCGGTGCCGCAGGCCACCATCACCAACCAGAAGTACCGCGCGATCG GTCTTGGCACCTTCGGTTGGCATCATCTGCTGGCGCAGAAGTCCATCCACTGGAATGCCAAGGAAGCCGAGGACTACAGC GACGAGCTGTACGAGCGCATCAACTACCTGACCATCCAGGCGAGCATGGAGCTGGCCAAGGAAAAGGGCACCTACAGCGT GTTCCGCGGCAGCGACTGGCACAACGGCGAGTACTTCCGTGCACGCGACTACAATAGCCCGCAGTGGCTGGAGCTGTCGG CGCAGGTGGCGGTCAATGGTGTGCGCAATGCGTGGATGCTGGCGGTGGCGCCGAACATGAGCACCGCGCAGATCGCCGGT TCCACCGCCTCGATCGACCCGATCTACAGCGCGTTCTACTACGAAGAAAAGAAGGACTTCCGTCGCCCGGTTGCCGCGCC CGGCCTGTCGCTGGAGACCTGGCCGTACTACGAAAAGGGCGCCTACAAGGTCGATCAGTTCGCCAGCGTGCGCCAGAACG CGCGCCGCCAGCGGCATGTGGACCAGTCGATCAGCTTCAACTTCTACGTGCCCAGCACCATTCGTGCGAGCACGCTGCTG GACCTGCACATGACCGCCTGGCGCGAAGGGTTGAAGACCACGTATTACGTGCGTTCCAACGATATCGACATCAGTGAGTG CGAGTGGTGTTCGAGCTAA
Upstream 100 bases:
>100_bases ATGGCCTGCGCGCTGTGCGTCCTGTGTCGCCAACGCACCCTGGACGCCGCTCGGTCGTTGCCTGCTCCGGCAGGTTCGTG TGCCTACGCATGGAGGACGC
Downstream 100 bases:
>100_bases AGCGCAATCGCGCTTTAGCTCCCCACGGTTCGCCTTGCGAACCGTGGGCCCCGGCTCATTAGCTCCCACACCCCGCGCCT TCGGCGCGCCCCCTGACTCA
Product: ribonucleotide-diphosphate reductase subunit alpha
Products: NA
Alternate protein names: Ribonucleotide reductase [H]
Number of amino acids: Translated: 832; Mature: 831
Protein sequence:
>832_residues MTTNDTLSAIAAGTATPTSVPASVAAPACGAPELTDPSDIVPPPRQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERL NRAIDQIHAEFPQLDVADYKRSVFGFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRASRNRFYD ASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYLLATRYLATDSSRGVFELPQERWLT IALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSK HGGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQRLR AHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANGSFRRKYEEVVADERITRKTVKAIEIFK RIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLG RAITVQADQADLLGADVLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEAEDYS DELYERINYLTIQASMELAKEKGTYSVFRGSDWHNGEYFRARDYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAG STASIDPIYSAFYYEEKKDFRRPVAAPGLSLETWPYYEKGAYKVDQFASVRQNARRQRHVDQSISFNFYVPSTIRASTLL DLHMTAWREGLKTTYYVRSNDIDISECEWCSS
Sequences:
>Translated_832_residues MTTNDTLSAIAAGTATPTSVPASVAAPACGAPELTDPSDIVPPPRQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERL NRAIDQIHAEFPQLDVADYKRSVFGFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRASRNRFYD ASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYLLATRYLATDSSRGVFELPQERWLT IALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSK HGGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQRLR AHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANGSFRRKYEEVVADERITRKTVKAIEIFK RIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLG RAITVQADQADLLGADVLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEAEDYS DELYERINYLTIQASMELAKEKGTYSVFRGSDWHNGEYFRARDYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAG STASIDPIYSAFYYEEKKDFRRPVAAPGLSLETWPYYEKGAYKVDQFASVRQNARRQRHVDQSISFNFYVPSTIRASTLL DLHMTAWREGLKTTYYVRSNDIDISECEWCSS >Mature_831_residues TTNDTLSAIAAGTATPTSVPASVAAPACGAPELTDPSDIVPPPRQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLN RAIDQIHAEFPQLDVADYKRSVFGFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRASRNRFYDA SQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYLLATRYLATDSSRGVFELPQERWLTI ALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKH GGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQRLRA HDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANGSFRRKYEEVVADERITRKTVKAIEIFKR IMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGR AITVQADQADLLGADVLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEAEDYSD ELYERINYLTIQASMELAKEKGTYSVFRGSDWHNGEYFRARDYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGS TASIDPIYSAFYYEEKKDFRRPVAAPGLSLETWPYYEKGAYKVDQFASVRQNARRQRHVDQSISFNFYVPSTIRASTLLD LHMTAWREGLKTTYYVRSNDIDISECEWCSS
Specific function: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides [H]
COG id: COG0209
COG function: function code F; Ribonucleotide reductase, alpha subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ATP-cone domain [H]
Homologues:
Organism=Homo sapiens, GI4506749, Length=723, Percent_Identity=30.4287690179806, Blast_Score=303, Evalue=5e-82, Organism=Escherichia coli, GI1789030, Length=687, Percent_Identity=30.5676855895196, Blast_Score=280, Evalue=2e-76, Organism=Escherichia coli, GI2367133, Length=793, Percent_Identity=26.4817150063052, Blast_Score=231, Evalue=1e-61, Organism=Caenorhabditis elegans, GI17555242, Length=742, Percent_Identity=30.7277628032345, Blast_Score=305, Evalue=9e-83, Organism=Saccharomyces cerevisiae, GI6320914, Length=746, Percent_Identity=30.9651474530831, Blast_Score=306, Evalue=1e-83, Organism=Saccharomyces cerevisiae, GI6322123, Length=746, Percent_Identity=31.0991957104558, Blast_Score=303, Evalue=8e-83, Organism=Drosophila melanogaster, GI17352481, Length=738, Percent_Identity=29.5392953929539, Blast_Score=291, Evalue=1e-78,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005144 - InterPro: IPR013346 - InterPro: IPR013509 - InterPro: IPR000788 - InterPro: IPR008926 [H]
Pfam domain/function: PF03477 ATP-cone; PF02867 Ribonuc_red_lgC; PF00317 Ribonuc_red_lgN [H]
EC number: =1.17.4.1 [H]
Molecular weight: Translated: 94177; Mature: 94046
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: PS51161 ATP_CONE ; PS00089 RIBORED_LARGE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTNDTLSAIAAGTATPTSVPASVAAPACGAPELTDPSDIVPPPRQAIAMHAQTIEEQNV CCCCHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC STWITKEAGNRKIPFEPERLNRAIDQIHAEFPQLDVADYKRSVFGFVERKDSVNADDLVD CEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH HLIREAEARVDLTTPEWEHFAARLYLRRLYKRASRNRFYDASQKYGSFVGLQESLADRNV HHHHHHHCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC YSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYLLATRYLATDSSRGVFELPQERWLT HHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHCCCCCCCEECCCHHHEE IALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDT EEEEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCHHHHHHHH VDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTA HHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHCCCE VSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFMEAVER EEHHHHCCCCCCEEEEHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHC RGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANGSFRRKYEEVVADERITRKTVKAIEIFK CCCEEEECHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMMQEIISGNQI HHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEHHHHHHHHHCCCHHHHHHHHHCCCEE VTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERLIPIQVRMLDNVIDLNQLPV EEEECCCCEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC PQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEAEDYSDELYERINYLTIQASMELAK CCHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEEEEHHHHHHH EKGTYSVFRGSDWHNGEYFRARDYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAG CCCCEEEECCCCCCCCCEEEECCCCCCCEEEEEHHHHHHCCCCEEEEEECCCCCHHHCCC STASIDPIYSAFYYEEKKDFRRPVAAPGLSLETWPYYEKGAYKVDQFASVRQNARRQRHV CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC DQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSNDIDISECEWCSS CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHCCCCCCC >Mature Secondary Structure TTNDTLSAIAAGTATPTSVPASVAAPACGAPELTDPSDIVPPPRQAIAMHAQTIEEQNV CCCHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC STWITKEAGNRKIPFEPERLNRAIDQIHAEFPQLDVADYKRSVFGFVERKDSVNADDLVD CEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH HLIREAEARVDLTTPEWEHFAARLYLRRLYKRASRNRFYDASQKYGSFVGLQESLADRNV HHHHHHHCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC YSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYLLATRYLATDSSRGVFELPQERWLT HHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHCCCCCCCEECCCHHHEE IALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDT EEEEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCHHHHHHHH VDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTA HHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHCCCE VSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFMEAVER EEHHHHCCCCCCEEEEHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHC RGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANGSFRRKYEEVVADERITRKTVKAIEIFK CCCEEEECHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMMQEIISGNQI HHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEHHHHHHHHHCCCHHHHHHHHHCCCEE VTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERLIPIQVRMLDNVIDLNQLPV EEEECCCCEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC PQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEAEDYSDELYERINYLTIQASMELAK CCHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEEEEHHHHHHH EKGTYSVFRGSDWHNGEYFRARDYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAG CCCCEEEECCCCCCCCCEEEECCCCCCCEEEEEHHHHHHCCCCEEEEEECCCCCHHHCCC STASIDPIYSAFYYEEKKDFRRPVAAPGLSLETWPYYEKGAYKVDQFASVRQNARRQRHV CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC DQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSNDIDISECEWCSS CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9665876 [H]