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The map label for this gene is rarD [H]

Identifier: 78049649

GI number: 78049649

Start: 4689965

End: 4690873

Strand: Reverse

Name: rarD [H]

Synonym: XCV4093

Alternate gene names: 78049649

Gene position: 4690873-4689965 (Counterclockwise)

Preceding gene: 162138529

Following gene: 78049643

Centisome position: 90.58

GC content: 67.44

Gene sequence:

>909_bases
ATGAGCGCGGTGTCGTCGCAGGAAGCACGCCGCGGGTTGTTGATCACCGCCTCCACCTTCGTGCTGTGGGGGCTGGTGCC
GGTGTACTGGCATCTGCTCAAGGCGGTGCCGTCGCTGCAGATCATCGCCCACCGCATCGTGTGGAGCACGGTGCTGGTGG
TGGCCTGGCTGCTGGCGAGCTCGGGCCTGCGTTGGTGGCGCAGCATCGCGGCGCAGCCCCGCGCGCTGGGCATGCTGGCC
GGCAGCAGCGTGGCGATCGCGTTCAATTGGGGCCTGTACATCTGGGCGATCAACGCCGGGCATGTGATCGAGGCCAGCCT
GGGATACTTCATCAACCCGCTGCTGAGCGTCTTGCTGGGCGTGCTGGTGTTGAAAGAGCGCCTGCGTCGCATCCAGTGGG
TGGCGGTGGCCTGCGCGGCAGCGGGCGTGCTGTGGCTGACCATCGATGCCGGCGCGCCGCCGTGGATTGCGTTGGGGCTG
GCGGTGTCCTTCGGTATTTACGGGCTGCTGCGCAAATTGGTGGCGGTGGATCCGGTGGCCGGGCTGGGCGTGGAAAGCGT
GTACCTGTTCGTGCCGGCGTTGCTGCTGGCGGCGTGGGGCGAGCAGGGCCACGGTGGCGCGTTCCTGAGCGGCTGGAGCC
TGCGGACCGACGCGATGCTGATCTTCGGTGGCGTGGTGACGGCGCTGCCGTTGATCGGTTTCGCCTACGGTGTGCGGCGC
ATTCCGCTGTCGTTGGTGGGCATCCTGCAATACATCGCGCCGAGCCTGCAGTTGCTGCTGGGCGTGTGGTTCTTCCACGA
GCCGTTCGATCAGGGGCGCGCGATGGGCTTTGCCGCGATCTGGGTGGGTTTGCTGTTATTTGTCGGCGACAGCGTGGTGC
GGTCGCGGCAGCCGGTGCTGACGCGCTAA

Upstream 100 bases:

>100_bases
GTGCCTGGTTGGGCCATGAGCGCTTCAGCGCGCAGGACATCGGTGCGATGGCGGTGATTCTGGCCGGCGTGCTGGTGGTC
ACCTTCGCCAAGGCGCGGCG

Downstream 100 bases:

>100_bases
GTCAGCCACCCTGCACGCAGTGCGTGTGGCATTCATCAGTGCGATTGCTTCGCGTCAGCGTGCGCGATTGCCGCGCTCAA
CTCTGCGGCATCGCCAGGGG

Product: drug/metabolite transporter superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MSAVSSQEARRGLLITASTFVLWGLVPVYWHLLKAVPSLQIIAHRIVWSTVLVVAWLLASSGLRWWRSIAAQPRALGMLA
GSSVAIAFNWGLYIWAINAGHVIEASLGYFINPLLSVLLGVLVLKERLRRIQWVAVACAAAGVLWLTIDAGAPPWIALGL
AVSFGIYGLLRKLVAVDPVAGLGVESVYLFVPALLLAAWGEQGHGGAFLSGWSLRTDAMLIFGGVVTALPLIGFAYGVRR
IPLSLVGILQYIAPSLQLLLGVWFFHEPFDQGRAMGFAAIWVGLLLFVGDSVVRSRQPVLTR

Sequences:

>Translated_302_residues
MSAVSSQEARRGLLITASTFVLWGLVPVYWHLLKAVPSLQIIAHRIVWSTVLVVAWLLASSGLRWWRSIAAQPRALGMLA
GSSVAIAFNWGLYIWAINAGHVIEASLGYFINPLLSVLLGVLVLKERLRRIQWVAVACAAAGVLWLTIDAGAPPWIALGL
AVSFGIYGLLRKLVAVDPVAGLGVESVYLFVPALLLAAWGEQGHGGAFLSGWSLRTDAMLIFGGVVTALPLIGFAYGVRR
IPLSLVGILQYIAPSLQLLLGVWFFHEPFDQGRAMGFAAIWVGLLLFVGDSVVRSRQPVLTR
>Mature_301_residues
SAVSSQEARRGLLITASTFVLWGLVPVYWHLLKAVPSLQIIAHRIVWSTVLVVAWLLASSGLRWWRSIAAQPRALGMLAG
SSVAIAFNWGLYIWAINAGHVIEASLGYFINPLLSVLLGVLVLKERLRRIQWVAVACAAAGVLWLTIDAGAPPWIALGLA
VSFGIYGLLRKLVAVDPVAGLGVESVYLFVPALLLAAWGEQGHGGAFLSGWSLRTDAMLIFGGVVTALPLIGFAYGVRRI
PLSLVGILQYIAPSLQLLLGVWFFHEPFDQGRAMGFAAIWVGLLLFVGDSVVRSRQPVLTR

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=295, Percent_Identity=38.9830508474576, Blast_Score=208, Evalue=4e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32626; Mature: 32495

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAVSSQEARRGLLITASTFVLWGLVPVYWHLLKAVPSLQIIAHRIVWSTVLVVAWLLAS
CCCCCCHHHHCCEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
SGLRWWRSIAAQPRALGMLAGSSVAIAFNWGLYIWAINAGHVIEASLGYFINPLLSVLLG
CCHHHHHHHHCCCHHHHEECCCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHH
VLVLKERLRRIQWVAVACAAAGVLWLTIDAGAPPWIALGLAVSFGIYGLLRKLVAVDPVA
HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
GLGVESVYLFVPALLLAAWGEQGHGGAFLSGWSLRTDAMLIFGGVVTALPLIGFAYGVRR
CCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IPLSLVGILQYIAPSLQLLLGVWFFHEPFDQGRAMGFAAIWVGLLLFVGDSVVRSRQPVL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TR
CC
>Mature Secondary Structure 
SAVSSQEARRGLLITASTFVLWGLVPVYWHLLKAVPSLQIIAHRIVWSTVLVVAWLLAS
CCCCCHHHHCCEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
SGLRWWRSIAAQPRALGMLAGSSVAIAFNWGLYIWAINAGHVIEASLGYFINPLLSVLLG
CCHHHHHHHHCCCHHHHEECCCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHH
VLVLKERLRRIQWVAVACAAAGVLWLTIDAGAPPWIALGLAVSFGIYGLLRKLVAVDPVA
HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
GLGVESVYLFVPALLLAAWGEQGHGGAFLSGWSLRTDAMLIFGGVVTALPLIGFAYGVRR
CCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IPLSLVGILQYIAPSLQLLLGVWFFHEPFDQGRAMGFAAIWVGLLLFVGDSVVRSRQPVL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TR
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]