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The map label for this gene is ydcJ [H]

Identifier: 78049524

GI number: 78049524

Start: 4560222

End: 4561589

Strand: Reverse

Name: ydcJ [H]

Synonym: XCV3968

Alternate gene names: 78049524

Gene position: 4561589-4560222 (Counterclockwise)

Preceding gene: 78049525

Following gene: 78049520

Centisome position: 88.09

GC content: 66.45

Gene sequence:

>1368_bases
ATGCGCGATACCGCCTTTGTCTCTCCCGATCAGATCCGCAGCTGGTTCGCCCAGGCGATGTCGGACATGTATCGCACCGA
GGTGCCGTTGTATGGCGACCTGATGTCGCTGGTGGCGCAGGTCAACGCGCAGACGCTGCAAGCCAATCCGGCGCTGGCGC
AGCGGCTGCAGCGCAACGACGAGCGCGCGCGGCTGGATCTGGAACGGCACGGCGCCATCCGCGTCGGCACGGCGGCCGAA
CTGGCGACCTTGCGTCGGTTGTTCGCAGTGATGGGCATGCAGCCGGTGGGCTATTACGACCTGTCGGTGGCCGGCGTGCC
GGTACATTCCACCGCATTCCGCCCGATCGACGAGGCGGCGCTGTCGGCAAATCCGTTTCGCGTGTTCACCTCGCTGCTGC
GGCTGGAACTGATCGAAGACGCCGCCCTGCGCGCACAGGCCGAGCAGATCCTGCAGCAGCGCCAGATCTTTACCGCCGGC
GCCTTGCAGTTGATCGAGCGCTACGAACAGCAGGGCGGGCTGGATGCCGATCAGGCACGGCAGTTCGTGGCCCAAGCGCT
GGAAACCTTCCGCTGGCATGGCGATGCCACGGTGTCGTTGCCGACCTATCGCGCGCTGAGCCAGGCGCATAAGTTGATTG
CCGATGTGGTGAGCTTCCACGGCCCGCATATCAATCACCTCACGCCACGCACGCTGGACATCGATGCCGCGCAGGAACAG
ATGCAGCGCGCCGGTATCGATGCCAAGGCGGTGATCGAGGGGCCGCCGCGTCGGCGCGTACCGATCCTGTTGCGGCAGAC
CAGTTTCAAGGCGCTGGAAGAGCCGGTGCGTTTTGTCGGCGATGGCGGGCAAGCGGAACACGGCACGCATACCGCACGCT
TCGGCGAGATCGAGCAGCGCGGCCTTGCCCTTACGCCAAAGGGTCGCGCGCTGTACGACGCGCTGCTGGCGCAGGCGCGC
GATGCCGATGGCGCCGGCAGCACCGGCACCGATTACGCCACCCGGCTGCAGACCGCCTTCGTGGCCTTCCCCGACGACGA
GGCGTTGCTGCGGCAGGAAGGGCTGGGCTATTTCCGCTATGCGCTCACCGATGCCGGCCGCGCCGACCCCGCACAGGTGG
CCGCCATGCCGGCAGAAACCGCGATCGCGCTCGGCCTGGTCAGTGCCGACCCGATCATTTACGAAGATTTTTTGCCGGTC
AGCGCGGCCGGCATCTTCCAATCCAACCTCGGTGGTGCCGAGCAACGCGCCTATGCCGCCCATTCGAGCAAGCGCAGTTT
CGAGCAGGCGCTCGGTGCGCAGGTGCACGACGAATTCGCGCTGTATGCGCAGCTGGAGCGGGAGTCCTTGCAGGGGTTGC
TGGCGTAG

Upstream 100 bases:

>100_bases
CGTCGCCTGCGATGCTGCCGTGCCGCTGGTCGACCCAGGCCGCGGTCGGCGAGAATGCGCTACCGCTGGCGTTCGGCCGG
CACCTGCCCAAGACCAGCCC

Downstream 100 bases:

>100_bases
GATCGCGGCATGCCGCATGCGGCGGCGGTATCAAGCGGGGCTCAGCGCATGCGTCTGTGCTTGCTTTGCGCAGGTGTCCT
CGCCCCACGGCATGGGTCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 455

Protein sequence:

>455_residues
MRDTAFVSPDQIRSWFAQAMSDMYRTEVPLYGDLMSLVAQVNAQTLQANPALAQRLQRNDERARLDLERHGAIRVGTAAE
LATLRRLFAVMGMQPVGYYDLSVAGVPVHSTAFRPIDEAALSANPFRVFTSLLRLELIEDAALRAQAEQILQQRQIFTAG
ALQLIERYEQQGGLDADQARQFVAQALETFRWHGDATVSLPTYRALSQAHKLIADVVSFHGPHINHLTPRTLDIDAAQEQ
MQRAGIDAKAVIEGPPRRRVPILLRQTSFKALEEPVRFVGDGGQAEHGTHTARFGEIEQRGLALTPKGRALYDALLAQAR
DADGAGSTGTDYATRLQTAFVAFPDDEALLRQEGLGYFRYALTDAGRADPAQVAAMPAETAIALGLVSADPIIYEDFLPV
SAAGIFQSNLGGAEQRAYAAHSSKRSFEQALGAQVHDEFALYAQLERESLQGLLA

Sequences:

>Translated_455_residues
MRDTAFVSPDQIRSWFAQAMSDMYRTEVPLYGDLMSLVAQVNAQTLQANPALAQRLQRNDERARLDLERHGAIRVGTAAE
LATLRRLFAVMGMQPVGYYDLSVAGVPVHSTAFRPIDEAALSANPFRVFTSLLRLELIEDAALRAQAEQILQQRQIFTAG
ALQLIERYEQQGGLDADQARQFVAQALETFRWHGDATVSLPTYRALSQAHKLIADVVSFHGPHINHLTPRTLDIDAAQEQ
MQRAGIDAKAVIEGPPRRRVPILLRQTSFKALEEPVRFVGDGGQAEHGTHTARFGEIEQRGLALTPKGRALYDALLAQAR
DADGAGSTGTDYATRLQTAFVAFPDDEALLRQEGLGYFRYALTDAGRADPAQVAAMPAETAIALGLVSADPIIYEDFLPV
SAAGIFQSNLGGAEQRAYAAHSSKRSFEQALGAQVHDEFALYAQLERESLQGLLA
>Mature_455_residues
MRDTAFVSPDQIRSWFAQAMSDMYRTEVPLYGDLMSLVAQVNAQTLQANPALAQRLQRNDERARLDLERHGAIRVGTAAE
LATLRRLFAVMGMQPVGYYDLSVAGVPVHSTAFRPIDEAALSANPFRVFTSLLRLELIEDAALRAQAEQILQQRQIFTAG
ALQLIERYEQQGGLDADQARQFVAQALETFRWHGDATVSLPTYRALSQAHKLIADVVSFHGPHINHLTPRTLDIDAAQEQ
MQRAGIDAKAVIEGPPRRRVPILLRQTSFKALEEPVRFVGDGGQAEHGTHTARFGEIEQRGLALTPKGRALYDALLAQAR
DADGAGSTGTDYATRLQTAFVAFPDDEALLRQEGLGYFRYALTDAGRADPAQVAAMPAETAIALGLVSADPIIYEDFLPV
SAAGIFQSNLGGAEQRAYAAHSSKRSFEQALGAQVHDEFALYAQLERESLQGLLA

Specific function: Unknown

COG id: COG5383

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv3292 [H]

Homologues:

Organism=Escherichia coli, GI1787692, Length=446, Percent_Identity=61.2107623318386, Blast_Score=523, Evalue=1e-149,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009770 [H]

Pfam domain/function: PF07063 DUF1338 [H]

EC number: NA

Molecular weight: Translated: 49807; Mature: 49807

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDTAFVSPDQIRSWFAQAMSDMYRTEVPLYGDLMSLVAQVNAQTLQANPALAQRLQRND
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
ERARLDLERHGAIRVGTAAELATLRRLFAVMGMQPVGYYDLSVAGVPVHSTAFRPIDEAA
HHHHCCHHHCCCEEECHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHH
LSANPFRVFTSLLRLELIEDAALRAQAEQILQQRQIFTAGALQLIERYEQQGGLDADQAR
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
QFVAQALETFRWHGDATVSLPTYRALSQAHKLIADVVSFHGPHINHLTPRTLDIDAAQEQ
HHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECHHHHHH
MQRAGIDAKAVIEGPPRRRVPILLRQTSFKALEEPVRFVGDGGQAEHGTHTARFGEIEQR
HHHCCCCCEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCHHHC
GLALTPKGRALYDALLAQARDADGAGSTGTDYATRLQTAFVAFPDDEALLRQEGLGYFRY
CEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHEEECCCHHHHHHHCCCCHHHH
ALTDAGRADPAQVAAMPAETAIALGLVSADPIIYEDFLPVSAAGIFQSNLGGAEQRAYAA
HHCCCCCCCHHHHHHCCHHHHHHHEECCCCCEEECCCCCHHHHHHHHHCCCCHHHHHHHH
HSSKRSFEQALGAQVHDEFALYAQLERESLQGLLA
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRDTAFVSPDQIRSWFAQAMSDMYRTEVPLYGDLMSLVAQVNAQTLQANPALAQRLQRND
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
ERARLDLERHGAIRVGTAAELATLRRLFAVMGMQPVGYYDLSVAGVPVHSTAFRPIDEAA
HHHHCCHHHCCCEEECHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHH
LSANPFRVFTSLLRLELIEDAALRAQAEQILQQRQIFTAGALQLIERYEQQGGLDADQAR
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
QFVAQALETFRWHGDATVSLPTYRALSQAHKLIADVVSFHGPHINHLTPRTLDIDAAQEQ
HHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECHHHHHH
MQRAGIDAKAVIEGPPRRRVPILLRQTSFKALEEPVRFVGDGGQAEHGTHTARFGEIEQR
HHHCCCCCEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCHHHC
GLALTPKGRALYDALLAQARDADGAGSTGTDYATRLQTAFVAFPDDEALLRQEGLGYFRY
CEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHEEECCCHHHHHHHCCCCHHHH
ALTDAGRADPAQVAAMPAETAIALGLVSADPIIYEDFLPVSAAGIFQSNLGGAEQRAYAA
HHCCCCCCCHHHHHHCCHHHHHHHEECCCCCEEECCCCCHHHHHHHHHCCCCHHHHHHHH
HSSKRSFEQALGAQVHDEFALYAQLERESLQGLLA
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]