Click here to switch to the map view.

The map label for this gene is 78049525

Identifier: 78049525

GI number: 78049525

Start: 4561753

End: 4562427

Strand: Reverse

Name: 78049525

Synonym: XCV3969

Alternate gene names: NA

Gene position: 4562427-4561753 (Counterclockwise)

Preceding gene: 78049526

Following gene: 78049524

Centisome position: 88.1

GC content: 69.93

Gene sequence:

>675_bases
GTGCCAGGCGCCCAGCAGCGGCGCTTGACCCGGCGCCGGCCTGACAGCACCGCACGCATGCGGCATCATCGCTGCATGCC
TGTCTCTTGCTCATCCGTGTTGCGCTCCGTGCCATTGCTGGTGGCCTCGCTGTGGCCGGCGCTGGGCGCAGCGCAGGCCT
CGCCGGCATCGGCGACCGCAGCTGCAACGGAAGAAGCGGCGCCAGCGGTGACGCCAGGCACCGGCGACGCCTGGGTGGAT
CAGCACCTGGCCGATATGGGCAGTTATGCGCAGCGCTATCCGGCCAGCTTCATCGACGAGGTGGCGCGCTATACCGGCAC
GCCGCGCGCGTATGTGCAGGCGCTGCTGCAGGTGCACGGCTGGCATGCCGGGGACATCTATTTCGCGTGCTTCTGGGCGC
AGACCGTGCAGCTGTCGTGCCGGGACACGGTACGCGCTTACAGCCGCGACCATCGCGATGGCTGGGAGGGTGTGGTCACG
CGGCTGTCGGTGGCACCGGACAACCTGCACATGCGCGCACTGCGGCATGCCATCGTGGCCAGCTACGACCGCTGGGAACG
TCCGATCACCCTGGACGCGTTGCTGCGGCGTCAGCTCGGCGATCATGCGCAGCGCCTGGAAGCGGCGCGCCAGGCGAGCG
AAGCGGCCGAAGCGGCGGTGCAGGCCGGGCTCTGA

Upstream 100 bases:

>100_bases
GCACGGGGCCGCTGCGGCCGACGCGCTGATCTATGCCCGATAGCGCACCTGGGGCACTGCGCTGCGCTTCCTCGCCAGGC
GTGGGCGTTGATACGCGGGT

Downstream 100 bases:

>100_bases
CGCGGTCGCTGCGTCGTCGCGCCATGCACTTGCCGGCATGGCGCGGCTGTCTGCGCAACAACACGTCGCCTGCGATGCTG
CCGTGCCGCTGGTCGACCCA

Product: putative secreted protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MPGAQQRRLTRRRPDSTARMRHHRCMPVSCSSVLRSVPLLVASLWPALGAAQASPASATAAATEEAAPAVTPGTGDAWVD
QHLADMGSYAQRYPASFIDEVARYTGTPRAYVQALLQVHGWHAGDIYFACFWAQTVQLSCRDTVRAYSRDHRDGWEGVVT
RLSVAPDNLHMRALRHAIVASYDRWERPITLDALLRRQLGDHAQRLEAARQASEAAEAAVQAGL

Sequences:

>Translated_224_residues
MPGAQQRRLTRRRPDSTARMRHHRCMPVSCSSVLRSVPLLVASLWPALGAAQASPASATAAATEEAAPAVTPGTGDAWVD
QHLADMGSYAQRYPASFIDEVARYTGTPRAYVQALLQVHGWHAGDIYFACFWAQTVQLSCRDTVRAYSRDHRDGWEGVVT
RLSVAPDNLHMRALRHAIVASYDRWERPITLDALLRRQLGDHAQRLEAARQASEAAEAAVQAGL
>Mature_223_residues
PGAQQRRLTRRRPDSTARMRHHRCMPVSCSSVLRSVPLLVASLWPALGAAQASPASATAAATEEAAPAVTPGTGDAWVDQ
HLADMGSYAQRYPASFIDEVARYTGTPRAYVQALLQVHGWHAGDIYFACFWAQTVQLSCRDTVRAYSRDHRDGWEGVVTR
LSVAPDNLHMRALRHAIVASYDRWERPITLDALLRRQLGDHAQRLEAARQASEAAEAAVQAGL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24637; Mature: 24506

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGAQQRRLTRRRPDSTARMRHHRCMPVSCSSVLRSVPLLVASLWPALGAAQASPASATA
CCCHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
AATEEAAPAVTPGTGDAWVDQHLADMGSYAQRYPASFIDEVARYTGTPRAYVQALLQVHG
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHC
WHAGDIYFACFWAQTVQLSCRDTVRAYSRDHRDGWEGVVTRLSVAPDNLHMRALRHAIVA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
SYDRWERPITLDALLRRQLGDHAQRLEAARQASEAAEAAVQAGL
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PGAQQRRLTRRRPDSTARMRHHRCMPVSCSSVLRSVPLLVASLWPALGAAQASPASATA
CCHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
AATEEAAPAVTPGTGDAWVDQHLADMGSYAQRYPASFIDEVARYTGTPRAYVQALLQVHG
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHC
WHAGDIYFACFWAQTVQLSCRDTVRAYSRDHRDGWEGVVTRLSVAPDNLHMRALRHAIVA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
SYDRWERPITLDALLRRQLGDHAQRLEAARQASEAAEAAVQAGL
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA