| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is tolB [H]
Identifier: 78049130
GI number: 78049130
Start: 4095912
End: 4098377
Strand: Reverse
Name: tolB [H]
Synonym: XCV3574
Alternate gene names: 78049130
Gene position: 4098377-4095912 (Counterclockwise)
Preceding gene: 78049131
Following gene: 78049129
Centisome position: 79.14
GC content: 65.61
Gene sequence:
>2466_bases ATGCATGACACAGTTGGTCGTCGTCCTTTGCTGAATTTGGCGTTTCGCGGAAGGCGCGGGGCGCTCTTTGTTGTTCTTGC ATGCCGACGCGTGTTTTTGCCGATGAGTGTTCCTCCCGCTATTGCAATGCCATCGGGCCGGCTGCGTGTCGGTCAGTGCG TGGTCGACATTGCCTCGCGCGAGGTGCACGCACCTGGCGCAAAGCGTCCGCTGCGGCTGGCGCCCAAATCCCTGGCGGTG TTGCTGACCCTGGCGCGGCAGCCGGGCCAGGTGGTCACGCGCGAGCAACTGCTTGCCGAGGTTTGGCCCGATACCTTGCC GACCAACGATGTGGTGACCCAGGCGGTCACGCAGCTGCGCAAGGCGTTTGCCAGCCACGGCGGGCAGCGCTCGGAGCACA TCGAGACCATCGCCAAGACCGGGTATCGCTTGATGGCGGCGGTTGTGTGGGAAGCGCAGGCACCTGCATCGGCGACGCTG CCTGGTGAAGCACTGGGTCCGGATACGCTCGAGCCGGCGCAGCCAGACCAAGGCGTGGCGTCCGTCCCCGACGAGTCCGA CGCTACCGCATCGCCCGTCCGCACCGCGCCTGGCCAGCCTGTAGCGCCCGTCGTTGCGGCGCCGGCCGCGCCACGACACC GGCGCTCGATGGCGCTGGCAGTCGCCAGCGTGGCGTTGCTGGTCGTGCTGAGCCTTGCGGTATGGACCTCATGGCGACCT GCTCCGGCACCTGAGACCGCGCAAGCGCATGCGGTGCTGGGCAGCCCCAAACGGCCGTATCAGGTCATTACCGCAGGCGG TGGATTCGATCTCACGCCAAGCCTGTCGCCCGATGGCGCGAGGGTGGCGTACGCCTCATTGACCAGCGATCGCACCGGCA CCTCGATCCTGGTCAAGACCACCGACAACGCCTATCCACGGGTACTGGAGACGCCTGCGCCCGGCGTCTCCGATCGTTTG CCGGCGTGGTCGCCGGATGGCCGGCAGATCGCGTTTTCCAGGCAGGCGCCCGATGGCAGCTGCCGGGTCATGATTGCCGC AGCCACCGGGCCTGCGGCGTCGCGCGAGGTAATGCGGTGCGATGGTGCCGACATGCTGAGTTTCAGCTGGTCGCCGGATG GGCGCGCGCTGGTGTTCGGCAGCATGACCGGCAAGCACGGTGCGGCCCGCATGCGTCGCCTGGATCTGGCAACCGGGCAG TGGCAGACGCTGGACTATCCGGCGCAGGCGGGTGATTTCGATTACGCGCCGCGGTATTCGCCCGATGGGAATTGGATCGT GTTCCTGCGTAATCCGCAGCTCGGGGACCTGTGGCGGATTCCGGCCGAAGGCGGCGTCGCCGAACGGCTCACCCATGACA ACGCCGATATCCGTGGATGGAGTTGGCTGCCCGATGGCAGCGGTTTGATCTTCGGGCGTCGCGTGGACAGCGAGGCGCGG CTGTATCGCCTCGATCTGCGGGACCACAGCTTGCACGATGTGGGCGTGGACGATGCGCAAGCACCGGACGTGGCGCATGG GCATCTGGTGTTCGTGCAACGCAAACCGCAGTTTGGCGTCTATCAGGTCATTGGCGACACGATGAACGGTGGCTACATTC GACGCCGACTGTTTCCATCCAGCGGGCGCGACGATCAGCCGATGATTGCGCCGGATGGGCGCCAGCTGATCTTTGCATCC AATCGATCCGGTGCGTACGCACTGTGGTGGGGCGATGTCCGCAAGCCCGGTTCGGTGCGCTTGATCGAAGGGCTGCGCCC GGATTCGCGCCAGGCCGCCGACTGGTCAGCCGATTCGCAACGCGTGCTGGTCAGCGGCAGCGATGCGGCCGGGCATGCGG CGCTATTCGAAGTGACCCCCAGTAGCGGCCAGGTAGTGCGACTACCCGTGCCGCAGCCGCGCCCGCTGCAGGCGATCCAT CTTCCCGATCCGGACCGGCTGCTGGTCCTTGCTGCTGCCGACGACGGGCATACCTTCGCAACGCTGTACGACCGGCGCAG CAGCCCATGGCGTGCGCTGGCAACGCTGCAGGACGTCTCGCAATTGCGACTGGACCGCGTCAGCGGACAGGTCTTGCTGA CCCGCCTCAGCGGGGGCGGTGTGTGGCAGGTCGCTCCATCGCTGGCCGCCGACACCTTGCATGCTGTCGATCCGCAACAG CCATCGCGCTGGCGGTATCGCAGTTGGGCTCCGGGCGTGAATGGCCAACTGCATTACCTGTCGTCCACCGACAGTTGCGC TGCCTACGATCGCGAGTTGCGCAGCGGCCGCGGCCAGTGCTTGGATGCGGTCAAGTTCACCACCATCAACGGTTTCAGCC TGAACCAGCGCGATGGGACGCTGTATGTGTCGCTGGCCGAAGAAGATGGCAGCGCCATCGCGTATATGCCATTGCCACAG CATTCCGTGGCGCCTATGGGCGTCATTGCTAACTTATTGTCGATATTGAGAAAAATCGCCTCGTAA
Upstream 100 bases:
>100_bases TCGTAATTATTCGAATTCGTCGGCGAGAGAGAGAGAGAGCCTGACGCTGCCGCCTGTCTTAGGAAGCAACGGGGCATAGC GTAAAATTTGCACCAAATGG
Downstream 100 bases:
>100_bases GTTCTTCGGAAAGGCTTCGTGGCAATTTCGGCGCAGTTTCGTCAAAACTTCCTGACTGACGCCACAGTCGGCAAAACACT ACGCCCTCTTTTGTACAGGG
Product: putative regulatory protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 821; Mature: 821
Protein sequence:
>821_residues MHDTVGRRPLLNLAFRGRRGALFVVLACRRVFLPMSVPPAIAMPSGRLRVGQCVVDIASREVHAPGAKRPLRLAPKSLAV LLTLARQPGQVVTREQLLAEVWPDTLPTNDVVTQAVTQLRKAFASHGGQRSEHIETIAKTGYRLMAAVVWEAQAPASATL PGEALGPDTLEPAQPDQGVASVPDESDATASPVRTAPGQPVAPVVAAPAAPRHRRSMALAVASVALLVVLSLAVWTSWRP APAPETAQAHAVLGSPKRPYQVITAGGGFDLTPSLSPDGARVAYASLTSDRTGTSILVKTTDNAYPRVLETPAPGVSDRL PAWSPDGRQIAFSRQAPDGSCRVMIAAATGPAASREVMRCDGADMLSFSWSPDGRALVFGSMTGKHGAARMRRLDLATGQ WQTLDYPAQAGDFDYAPRYSPDGNWIVFLRNPQLGDLWRIPAEGGVAERLTHDNADIRGWSWLPDGSGLIFGRRVDSEAR LYRLDLRDHSLHDVGVDDAQAPDVAHGHLVFVQRKPQFGVYQVIGDTMNGGYIRRRLFPSSGRDDQPMIAPDGRQLIFAS NRSGAYALWWGDVRKPGSVRLIEGLRPDSRQAADWSADSQRVLVSGSDAAGHAALFEVTPSSGQVVRLPVPQPRPLQAIH LPDPDRLLVLAAADDGHTFATLYDRRSSPWRALATLQDVSQLRLDRVSGQVLLTRLSGGGVWQVAPSLAADTLHAVDPQQ PSRWRYRSWAPGVNGQLHYLSSTDSCAAYDRELRSGRGQCLDAVKFTTINGFSLNQRDGTLYVSLAEEDGSAIAYMPLPQ HSVAPMGVIANLLSILRKIAS
Sequences:
>Translated_821_residues MHDTVGRRPLLNLAFRGRRGALFVVLACRRVFLPMSVPPAIAMPSGRLRVGQCVVDIASREVHAPGAKRPLRLAPKSLAV LLTLARQPGQVVTREQLLAEVWPDTLPTNDVVTQAVTQLRKAFASHGGQRSEHIETIAKTGYRLMAAVVWEAQAPASATL PGEALGPDTLEPAQPDQGVASVPDESDATASPVRTAPGQPVAPVVAAPAAPRHRRSMALAVASVALLVVLSLAVWTSWRP APAPETAQAHAVLGSPKRPYQVITAGGGFDLTPSLSPDGARVAYASLTSDRTGTSILVKTTDNAYPRVLETPAPGVSDRL PAWSPDGRQIAFSRQAPDGSCRVMIAAATGPAASREVMRCDGADMLSFSWSPDGRALVFGSMTGKHGAARMRRLDLATGQ WQTLDYPAQAGDFDYAPRYSPDGNWIVFLRNPQLGDLWRIPAEGGVAERLTHDNADIRGWSWLPDGSGLIFGRRVDSEAR LYRLDLRDHSLHDVGVDDAQAPDVAHGHLVFVQRKPQFGVYQVIGDTMNGGYIRRRLFPSSGRDDQPMIAPDGRQLIFAS NRSGAYALWWGDVRKPGSVRLIEGLRPDSRQAADWSADSQRVLVSGSDAAGHAALFEVTPSSGQVVRLPVPQPRPLQAIH LPDPDRLLVLAAADDGHTFATLYDRRSSPWRALATLQDVSQLRLDRVSGQVLLTRLSGGGVWQVAPSLAADTLHAVDPQQ PSRWRYRSWAPGVNGQLHYLSSTDSCAAYDRELRSGRGQCLDAVKFTTINGFSLNQRDGTLYVSLAEEDGSAIAYMPLPQ HSVAPMGVIANLLSILRKIAS >Mature_821_residues MHDTVGRRPLLNLAFRGRRGALFVVLACRRVFLPMSVPPAIAMPSGRLRVGQCVVDIASREVHAPGAKRPLRLAPKSLAV LLTLARQPGQVVTREQLLAEVWPDTLPTNDVVTQAVTQLRKAFASHGGQRSEHIETIAKTGYRLMAAVVWEAQAPASATL PGEALGPDTLEPAQPDQGVASVPDESDATASPVRTAPGQPVAPVVAAPAAPRHRRSMALAVASVALLVVLSLAVWTSWRP APAPETAQAHAVLGSPKRPYQVITAGGGFDLTPSLSPDGARVAYASLTSDRTGTSILVKTTDNAYPRVLETPAPGVSDRL PAWSPDGRQIAFSRQAPDGSCRVMIAAATGPAASREVMRCDGADMLSFSWSPDGRALVFGSMTGKHGAARMRRLDLATGQ WQTLDYPAQAGDFDYAPRYSPDGNWIVFLRNPQLGDLWRIPAEGGVAERLTHDNADIRGWSWLPDGSGLIFGRRVDSEAR LYRLDLRDHSLHDVGVDDAQAPDVAHGHLVFVQRKPQFGVYQVIGDTMNGGYIRRRLFPSSGRDDQPMIAPDGRQLIFAS NRSGAYALWWGDVRKPGSVRLIEGLRPDSRQAADWSADSQRVLVSGSDAAGHAALFEVTPSSGQVVRLPVPQPRPLQAIH LPDPDRLLVLAAADDGHTFATLYDRRSSPWRALATLQDVSQLRLDRVSGQVLLTRLSGGGVWQVAPSLAADTLHAVDPQQ PSRWRYRSWAPGVNGQLHYLSSTDSCAAYDRELRSGRGQCLDAVKFTTINGFSLNQRDGTLYVSLAEEDGSAIAYMPLPQ HSVAPMGVIANLLSILRKIAS
Specific function: Involved in the tonB-independent uptake of proteins [H]
COG id: COG3710
COG function: function code K; DNA-binding winged-HTH domains
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tolB family [H]
Homologues:
Organism=Escherichia coli, GI1790576, Length=106, Percent_Identity=33.0188679245283, Blast_Score=73, Evalue=7e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011659 - InterPro: IPR014167 - InterPro: IPR007195 - InterPro: IPR015943 [H]
Pfam domain/function: PF07676 PD40; PF04052 TolB_N [H]
EC number: NA
Molecular weight: Translated: 88502; Mature: 88502
Theoretical pI: Translated: 9.34; Mature: 9.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHDTVGRRPLLNLAFRGRRGALFVVLACRRVFLPMSVPPAIAMPSGRLRVGQCVVDIASR CCCCCCCCCHHHHEECCCCCCEEEEEEHHHHHCCCCCCCCEECCCCCEEHHHHHHHHHCC EVHAPGAKRPLRLAPKSLAVLLTLARQPGQVVTREQLLAEVWPDTLPTNDVVTQAVTQLR CCCCCCCCCCCEECHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH KAFASHGGQRSEHIETIAKTGYRLMAAVVWEAQAPASATLPGEALGPDTLEPAQPDQGVA HHHHHCCCCCHHHHHHHHHCCHHEEEEHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SVPDESDATASPVRTAPGQPVAPVVAAPAAPRHRRSMALAVASVALLVVLSLAVWTSWRP CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC APAPETAQAHAVLGSPKRPYQVITAGGGFDLTPSLSPDGARVAYASLTSDRTGTSILVKT CCCCCCCCHHEEECCCCCCEEEEEECCCEECCCCCCCCCCEEEEEEECCCCCCCEEEEEE TDNAYPRVLETPAPGVSDRLPAWSPDGRQIAFSRQAPDGSCRVMIAAATGPAASREVMRC CCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCCCCCHHHCC DGADMLSFSWSPDGRALVFGSMTGKHGAARMRRLDLATGQWQTLDYPAQAGDFDYAPRYS CCCCEEEEEECCCCCEEEEECCCCCCHHHHHHHEECCCCCEEEECCCCCCCCCCCCCCCC PDGNWIVFLRNPQLGDLWRIPAEGGVAERLTHDNADIRGWSWLPDGSGLIFGRRVDSEAR CCCCEEEEECCCCCCCEEECCCCCCHHHHHCCCCCCCCCEEECCCCCCEEEEEEECCCCE LYRLDLRDHSLHDVGVDDAQAPDVAHGHLVFVQRKPQFGVYQVIGDTMNGGYIRRRLFPS EEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEEECCC SGRDDQPMIAPDGRQLIFASNRSGAYALWWGDVRKPGSVRLIEGLRPDSRQAADWSADSQ CCCCCCCEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC RVLVSGSDAAGHAALFEVTPSSGQVVRLPVPQPRPLQAIHLPDPDRLLVLAAADDGHTFA EEEEECCCCCCCEEEEEECCCCCCEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEE TLYDRRSSPWRALATLQDVSQLRLDRVSGQVLLTRLSGGGVWQVAPSLAADTLHAVDPQQ EEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEECCHHHHHHHHCCCCCC PSRWRYRSWAPGVNGQLHYLSSTDSCAAYDRELRSGRGQCLDAVKFTTINGFSLNQRDGT CCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEEECCEEECCCCCE LYVSLAEEDGSAIAYMPLPQHSVAPMGVIANLLSILRKIAS EEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MHDTVGRRPLLNLAFRGRRGALFVVLACRRVFLPMSVPPAIAMPSGRLRVGQCVVDIASR CCCCCCCCCHHHHEECCCCCCEEEEEEHHHHHCCCCCCCCEECCCCCEEHHHHHHHHHCC EVHAPGAKRPLRLAPKSLAVLLTLARQPGQVVTREQLLAEVWPDTLPTNDVVTQAVTQLR CCCCCCCCCCCEECHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH KAFASHGGQRSEHIETIAKTGYRLMAAVVWEAQAPASATLPGEALGPDTLEPAQPDQGVA HHHHHCCCCCHHHHHHHHHCCHHEEEEHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SVPDESDATASPVRTAPGQPVAPVVAAPAAPRHRRSMALAVASVALLVVLSLAVWTSWRP CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC APAPETAQAHAVLGSPKRPYQVITAGGGFDLTPSLSPDGARVAYASLTSDRTGTSILVKT CCCCCCCCHHEEECCCCCCEEEEEECCCEECCCCCCCCCCEEEEEEECCCCCCCEEEEEE TDNAYPRVLETPAPGVSDRLPAWSPDGRQIAFSRQAPDGSCRVMIAAATGPAASREVMRC CCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCCCCCHHHCC DGADMLSFSWSPDGRALVFGSMTGKHGAARMRRLDLATGQWQTLDYPAQAGDFDYAPRYS CCCCEEEEEECCCCCEEEEECCCCCCHHHHHHHEECCCCCEEEECCCCCCCCCCCCCCCC PDGNWIVFLRNPQLGDLWRIPAEGGVAERLTHDNADIRGWSWLPDGSGLIFGRRVDSEAR CCCCEEEEECCCCCCCEEECCCCCCHHHHHCCCCCCCCCEEECCCCCCEEEEEEECCCCE LYRLDLRDHSLHDVGVDDAQAPDVAHGHLVFVQRKPQFGVYQVIGDTMNGGYIRRRLFPS EEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEEECCC SGRDDQPMIAPDGRQLIFASNRSGAYALWWGDVRKPGSVRLIEGLRPDSRQAADWSADSQ CCCCCCCEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC RVLVSGSDAAGHAALFEVTPSSGQVVRLPVPQPRPLQAIHLPDPDRLLVLAAADDGHTFA EEEEECCCCCCCEEEEEECCCCCCEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEE TLYDRRSSPWRALATLQDVSQLRLDRVSGQVLLTRLSGGGVWQVAPSLAADTLHAVDPQQ EEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEECCHHHHHHHHCCCCCC PSRWRYRSWAPGVNGQLHYLSSTDSCAAYDRELRSGRGQCLDAVKFTTINGFSLNQRDGT CCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEEECCEEECCCCCE LYVSLAEEDGSAIAYMPLPQHSVAPMGVIANLLSILRKIAS EEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA