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The map label for this gene is tdcF [C]

Identifier: 78049095

GI number: 78049095

Start: 4054126

End: 4054629

Strand: Reverse

Name: tdcF [C]

Synonym: XCV3539

Alternate gene names: 78049095

Gene position: 4054629-4054126 (Counterclockwise)

Preceding gene: 78049096

Following gene: 78049094

Centisome position: 78.3

GC content: 61.9

Gene sequence:

>504_bases
ATGCTCCGTTCCATCACGACCGTTCTCACCGCCGCAGTGCTTTGGTCTTCCAGTCTCGGTGCCGCACACGCGGCCGAGGT
GATCCGCCACAAGATTCCCAACAGCGATTTTCCCATCGCTGCCGCGGTGGAAATTCCGGCCGGCAAGGCCACGGTGTATG
TCAGTGGCAAGTTGCCGGCGGTGATCGATACCAGTGCGCCGAAGGATTCGGCGGCCGCCTATGGCGACACCAAGGTGCAG
ACGGTGAGCGTGTTGAACCAGATCAAGCAGCAGCTGGCCACGCTGGGGTTGGGCATGGGCGATGTGGTGAAGATGCAGGT
GTTTCTGGTCGGCGATCCGGCGATGGGCGGCAAGATGGATTTCAGCGGCTTCATGGAAGGCTATCGCCAGTTTTTCGGCA
CCAAGGAGCAACCCAACCTGCCGGCGCGCTCGGCATTCCAGATCGCAGCGCTGGGTAACCCGCTGTACCGGGTCGAGATC
GAAGTGGTTGCCGTGCGTCCCTGA

Upstream 100 bases:

>100_bases
CTATGTGCGCACGCACTTCGGTAACGACTATGCCGAGCGCGTGACCATCGACGATGTCAGATCACTCCGCCGCTGATCTT
CTCTCCTACAAGGAATTGCC

Downstream 100 bases:

>100_bases
ATCCGCGTTGTCATCCTGCTGGAGGTTGTCATGAACACTGCTCTTTCGCGCCGCGCGTTTCTACGCGACTCCGCGTTGTT
TGCCGGCGCCGCCGGTGCCG

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: TdcF Protein; Translation Initiation Inhibitor; Endoribonuclease; Endoribonuclease L-PSP Family; Endonuclease L-PSP Endoribonuclease; Endoribonuclease L-Psp; Endoribonuclease L-PSP Family Protein; Endoribonuclease L-PSP Superfamily

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MLRSITTVLTAAVLWSSSLGAAHAAEVIRHKIPNSDFPIAAAVEIPAGKATVYVSGKLPAVIDTSAPKDSAAAYGDTKVQ
TVSVLNQIKQQLATLGLGMGDVVKMQVFLVGDPAMGGKMDFSGFMEGYRQFFGTKEQPNLPARSAFQIAALGNPLYRVEI
EVVAVRP

Sequences:

>Translated_167_residues
MLRSITTVLTAAVLWSSSLGAAHAAEVIRHKIPNSDFPIAAAVEIPAGKATVYVSGKLPAVIDTSAPKDSAAAYGDTKVQ
TVSVLNQIKQQLATLGLGMGDVVKMQVFLVGDPAMGGKMDFSGFMEGYRQFFGTKEQPNLPARSAFQIAALGNPLYRVEI
EVVAVRP
>Mature_167_residues
MLRSITTVLTAAVLWSSSLGAAHAAEVIRHKIPNSDFPIAAAVEIPAGKATVYVSGKLPAVIDTSAPKDSAAAYGDTKVQ
TVSVLNQIKQQLATLGLGMGDVVKMQVFLVGDPAMGGKMDFSGFMEGYRQFFGTKEQPNLPARSAFQIAALGNPLYRVEI
EVVAVRP

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17648; Mature: 17648

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRSITTVLTAAVLWSSSLGAAHAAEVIRHKIPNSDFPIAAAVEIPAGKATVYVSGKLPA
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEECCCCCE
VIDTSAPKDSAAAYGDTKVQTVSVLNQIKQQLATLGLGMGDVVKMQVFLVGDPAMGGKMD
EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCC
FSGFMEGYRQFFGTKEQPNLPARSAFQIAALGNPLYRVEIEVVAVRP
HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEEEEEEEEEECC
>Mature Secondary Structure
MLRSITTVLTAAVLWSSSLGAAHAAEVIRHKIPNSDFPIAAAVEIPAGKATVYVSGKLPA
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEECCCCCE
VIDTSAPKDSAAAYGDTKVQTVSVLNQIKQQLATLGLGMGDVVKMQVFLVGDPAMGGKMD
EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCC
FSGFMEGYRQFFGTKEQPNLPARSAFQIAALGNPLYRVEIEVVAVRP
HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA