Click here to switch to the map view.

The map label for this gene is yagR [H]

Identifier: 78048600

GI number: 78048600

Start: 3466019

End: 3468226

Strand: Reverse

Name: yagR [H]

Synonym: XCV3044

Alternate gene names: 78048600

Gene position: 3468226-3466019 (Counterclockwise)

Preceding gene: 78048601

Following gene: 78048599

Centisome position: 66.97

GC content: 64.95

Gene sequence:

>2208_bases
ATGAAATTCGACACTCCCGCCGGCACCAATCCCATCGATCAGCTCACTGTCGTCGGCAAGCCCGTCGACCGTATCGACGG
GCCACTCAAGACCACCGGGCAGGCACCGTATGCCTACGAACATCACGACCTGCCGGGCCAGCCCGCTTACGGGCATGTGG
TGGGCGCAGGCATCGCCAAGGGCACCATCCGCAGCATCGATCTGAGCGCGGCGCGCAAGGCGCCGGGCGTGCTGGGCATC
GTGACCGCGCAGAACGCAGGCAAGTTGCAAAAGGGCAAGTTCAACACCGCCAAGCTGTTGGGTGGCCCCGAGATCGCGCA
TTACCACCAGGCCATTGCCGTGGTGGTGGCGGAAACCTTCGAGCAGGCGCGTGCGGCCGGCCAGTTGATCAAGGTCGATT
ACGGCCGGCACGTTGGCGCCTACGATCTGGAAAAGGCCCGTGGCGGCGCCAAGGTGACCAAGAAGGGCGACGCGCCCAAC
AGCAATGTCGGCAACTTCGACGCTGCCTTCGCTACGGCGCCGGTGCAACTGGATGCCCAATACACCACACCGGATCATTC
GCACGCGATGATGGAGCCGCACGCATCGATTGCCATGTGGGATGGCGACAAGCTCAGCGTGTGGACATCCAATCAGATGA
TCAATTGGGGTGCCGGCGATCTGGCCAGGACGCTGGGCCTCCCGCGCGAAAACGTGCGGATCATGTCGCCGTACGTCGGC
GGCGGTTTCGGCGGCAAGCTGTTCCTGCGTGCCGATGTAGTCCTGGCATCGCTGGCCGCGCGTCAGGTGGGACGTCCGGT
CAAGGTGATGTTGCCGCGGCCGCTGATCGCCAATAACACCACCCACCGCCCGGCCACGGTGCAACGCATCCGGCTTGGGG
CCGGGCGCGACGGCAAGCTCACGGCGATTGCGCATGAAAGCTGGTCGGGCGACTTGCCCGACGGCAGCCCGGAAAACGCC
GCTGCACAAACGCAATTGCTCTACGCCGGTGCTAACCGCCTGATTACGACCCGTCTGGCCGTGCTCGATCTGCCCGAAGG
CAACGCCATGCGCGCGCCGGGCGAGGCGCCGGGATTGATGGCGTTGGAAATCGCCATGGACGGGATGGCCGAAAAGCTCG
ACATGGATCCGGTCAAGTTCCGCATCGTCAACGACACCCAGGTAGACCCGGAAAATCCGCAACGCCCGTTCTCGCAGCGT
CAGCTGGTTAAGTGCCTGGAAGATGGCGCAAAGCGATTCGAGTGGTCCAAGCGCAAGGCCAGGCCGGGCAGCACGCGCGA
CGGTCGTTGGCTGGTCGGCATGGGCGTGGCGGCGGCATTTCGCAACGCGCCGGTCACGACCTCCGGCGCGCGTATGCGGC
TGGAGCAGGGCGGGCGCGTGGTGGTGGAAACCGACATGACCGATATCGGGACCGGCTCCTATACCATCATTGCGCAGACC
GCTGCGGAAATGCTTGGGGTCCCGCTGAACTGGGTGGATGTGCGCCTGGGCGATTCGAGCTTTCCGGCCTCTGCAGGCTC
CGGCGGGCAGTGGGGCGCGAACAGTTCCACCGCAGGCGTCTATGCGGCCGCAGTCAAGTTGCGTGAAGCGGTGGCCAGGC
AATTGGGCCTGGATCCGGCCGCTGCCGAATTTGCCGATGGCTATGTGCGCGCCGGTGGCAAGCGCATTGCGCTCGGCGAT
GCCGCGGCCAGTGGCGCGCTGGTGGTGGAAGACAAGATCGAGTTCGGCGACCTCAGCAAGACGCATCAACTTTCCACGTT
CGGCGCGCATTTCGTCGAGGTGGGCGTGGATGTGGCCACCGCCGAAGTGCGCATCCGGCGCATGCTTGCCGTATGCGCCG
CAGGACGCATCCTCAACCCCAAATCCGCACGCAGCCAGGTCATCGGCGGCATGACCATGGGCGCCGGCGCGGCACTGATG
GAAGAGCTGGCAGTGGACAAACGCCTGGGCTTTTTCGTCAACCACGACCTGGCCGGCTATGAAGTGCCGGTGCATGCGGA
CATCCCGCATCAGGACGTGGTGTTCCTGGAAGAAAGCGACCCGCTATCGTCGCCGATGAAGGCCAAGGGCGTGGGTGAGT
TGGGCATCTGCGGCGTGGCAGCAGCCATCGCAAATGCGGTGTACAACGCAACCGGCGTGCGTGTGCGCGACTATCCGGTG
ACCCTGGACAAATTGCTGCCGCACCTGCCCGAGATGCTGCGCGCGTGA

Upstream 100 bases:

>100_bases
GTGTTGCTCGACGGCGCACAGCCCACCGAACACAACGCATTCAAGGTGCCGCTGGTCGAGCGCACCTTGACCGCGATCCT
GGCCGACACGAGGGCCTGAT

Downstream 100 bases:

>100_bases
GCGCGGTGGTTGCCCAGGTCGCGCATGCGCCGCCGGCGTGGCCGGCATGGCCGGGCTACGCGTTGCTCGACGATTTGTTG
CCAACGTTGAGCGCATGGCA

Product: putative xanthine dehydrogenase molybdenum binding subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 735; Mature: 735

Protein sequence:

>735_residues
MKFDTPAGTNPIDQLTVVGKPVDRIDGPLKTTGQAPYAYEHHDLPGQPAYGHVVGAGIAKGTIRSIDLSAARKAPGVLGI
VTAQNAGKLQKGKFNTAKLLGGPEIAHYHQAIAVVVAETFEQARAAGQLIKVDYGRHVGAYDLEKARGGAKVTKKGDAPN
SNVGNFDAAFATAPVQLDAQYTTPDHSHAMMEPHASIAMWDGDKLSVWTSNQMINWGAGDLARTLGLPRENVRIMSPYVG
GGFGGKLFLRADVVLASLAARQVGRPVKVMLPRPLIANNTTHRPATVQRIRLGAGRDGKLTAIAHESWSGDLPDGSPENA
AAQTQLLYAGANRLITTRLAVLDLPEGNAMRAPGEAPGLMALEIAMDGMAEKLDMDPVKFRIVNDTQVDPENPQRPFSQR
QLVKCLEDGAKRFEWSKRKARPGSTRDGRWLVGMGVAAAFRNAPVTTSGARMRLEQGGRVVVETDMTDIGTGSYTIIAQT
AAEMLGVPLNWVDVRLGDSSFPASAGSGGQWGANSSTAGVYAAAVKLREAVARQLGLDPAAAEFADGYVRAGGKRIALGD
AAASGALVVEDKIEFGDLSKTHQLSTFGAHFVEVGVDVATAEVRIRRMLAVCAAGRILNPKSARSQVIGGMTMGAGAALM
EELAVDKRLGFFVNHDLAGYEVPVHADIPHQDVVFLEESDPLSSPMKAKGVGELGICGVAAAIANAVYNATGVRVRDYPV
TLDKLLPHLPEMLRA

Sequences:

>Translated_735_residues
MKFDTPAGTNPIDQLTVVGKPVDRIDGPLKTTGQAPYAYEHHDLPGQPAYGHVVGAGIAKGTIRSIDLSAARKAPGVLGI
VTAQNAGKLQKGKFNTAKLLGGPEIAHYHQAIAVVVAETFEQARAAGQLIKVDYGRHVGAYDLEKARGGAKVTKKGDAPN
SNVGNFDAAFATAPVQLDAQYTTPDHSHAMMEPHASIAMWDGDKLSVWTSNQMINWGAGDLARTLGLPRENVRIMSPYVG
GGFGGKLFLRADVVLASLAARQVGRPVKVMLPRPLIANNTTHRPATVQRIRLGAGRDGKLTAIAHESWSGDLPDGSPENA
AAQTQLLYAGANRLITTRLAVLDLPEGNAMRAPGEAPGLMALEIAMDGMAEKLDMDPVKFRIVNDTQVDPENPQRPFSQR
QLVKCLEDGAKRFEWSKRKARPGSTRDGRWLVGMGVAAAFRNAPVTTSGARMRLEQGGRVVVETDMTDIGTGSYTIIAQT
AAEMLGVPLNWVDVRLGDSSFPASAGSGGQWGANSSTAGVYAAAVKLREAVARQLGLDPAAAEFADGYVRAGGKRIALGD
AAASGALVVEDKIEFGDLSKTHQLSTFGAHFVEVGVDVATAEVRIRRMLAVCAAGRILNPKSARSQVIGGMTMGAGAALM
EELAVDKRLGFFVNHDLAGYEVPVHADIPHQDVVFLEESDPLSSPMKAKGVGELGICGVAAAIANAVYNATGVRVRDYPV
TLDKLLPHLPEMLRA
>Mature_735_residues
MKFDTPAGTNPIDQLTVVGKPVDRIDGPLKTTGQAPYAYEHHDLPGQPAYGHVVGAGIAKGTIRSIDLSAARKAPGVLGI
VTAQNAGKLQKGKFNTAKLLGGPEIAHYHQAIAVVVAETFEQARAAGQLIKVDYGRHVGAYDLEKARGGAKVTKKGDAPN
SNVGNFDAAFATAPVQLDAQYTTPDHSHAMMEPHASIAMWDGDKLSVWTSNQMINWGAGDLARTLGLPRENVRIMSPYVG
GGFGGKLFLRADVVLASLAARQVGRPVKVMLPRPLIANNTTHRPATVQRIRLGAGRDGKLTAIAHESWSGDLPDGSPENA
AAQTQLLYAGANRLITTRLAVLDLPEGNAMRAPGEAPGLMALEIAMDGMAEKLDMDPVKFRIVNDTQVDPENPQRPFSQR
QLVKCLEDGAKRFEWSKRKARPGSTRDGRWLVGMGVAAAFRNAPVTTSGARMRLEQGGRVVVETDMTDIGTGSYTIIAQT
AAEMLGVPLNWVDVRLGDSSFPASAGSGGQWGANSSTAGVYAAAVKLREAVARQLGLDPAAAEFADGYVRAGGKRIALGD
AAASGALVVEDKIEFGDLSKTHQLSTFGAHFVEVGVDVATAEVRIRRMLAVCAAGRILNPKSARSQVIGGMTMGAGAALM
EELAVDKRLGFFVNHDLAGYEVPVHADIPHQDVVFLEESDPLSSPMKAKGVGELGICGVAAAIANAVYNATGVRVRDYPV
TLDKLLPHLPEMLRA

Specific function: Unknown

COG id: COG1529

COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI71773480, Length=751, Percent_Identity=24.7669773635153, Blast_Score=142, Evalue=1e-33,
Organism=Homo sapiens, GI91823271, Length=764, Percent_Identity=23.9528795811518, Blast_Score=135, Evalue=2e-31,
Organism=Escherichia coli, GI1786478, Length=733, Percent_Identity=68.7585266030014, Blast_Score=1015, Evalue=0.0,
Organism=Escherichia coli, GI1789230, Length=761, Percent_Identity=30.4862023653088, Blast_Score=253, Evalue=3e-68,
Organism=Escherichia coli, GI1789246, Length=809, Percent_Identity=26.6996291718171, Blast_Score=200, Evalue=4e-52,
Organism=Caenorhabditis elegans, GI17540638, Length=719, Percent_Identity=25.1738525730181, Blast_Score=170, Evalue=3e-42,
Organism=Caenorhabditis elegans, GI32566215, Length=548, Percent_Identity=22.0802919708029, Blast_Score=85, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24647199, Length=736, Percent_Identity=24.4565217391304, Blast_Score=154, Evalue=3e-37,
Organism=Drosophila melanogaster, GI24647201, Length=728, Percent_Identity=24.0384615384615, Blast_Score=132, Evalue=1e-30,
Organism=Drosophila melanogaster, GI24647195, Length=759, Percent_Identity=24.7694334650856, Blast_Score=131, Evalue=1e-30,
Organism=Drosophila melanogaster, GI24647197, Length=777, Percent_Identity=24.1956241956242, Blast_Score=123, Evalue=4e-28,
Organism=Drosophila melanogaster, GI24647193, Length=739, Percent_Identity=24.3572395128552, Blast_Score=123, Evalue=6e-28,
Organism=Drosophila melanogaster, GI17737937, Length=701, Percent_Identity=23.8231098430813, Blast_Score=121, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000674
- InterPro:   IPR008274 [H]

Pfam domain/function: PF01315 Ald_Xan_dh_C; PF02738 Ald_Xan_dh_C2 [H]

EC number: =1.17.1.4 [H]

Molecular weight: Translated: 77755; Mature: 77755

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFDTPAGTNPIDQLTVVGKPVDRIDGPLKTTGQAPYAYEHHDLPGQPAYGHVVGAGIAK
CCCCCCCCCCCHHHEEEECCCHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCC
GTIRSIDLSAARKAPGVLGIVTAQNAGKLQKGKFNTAKLLGGPEIAHYHQAIAVVVAETF
CCEEEEEHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHH
EQARAAGQLIKVDYGRHVGAYDLEKARGGAKVTKKGDAPNSNVGNFDAAFATAPVQLDAQ
HHHHHCCCEEEEECCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCCCHHHEECCEEEEEE
YTTPDHSHAMMEPHASIAMWDGDKLSVWTSNQMINWGAGDLARTLGLPRENVRIMSPYVG
ECCCCCCCCEECCCCEEEEECCCEEEEEECCCEEECCCHHHHHHHCCCCCCCEEECCCCC
GGFGGKLFLRADVVLASLAARQVGRPVKVMLPRPLIANNTTHRPATVQRIRLGAGRDGKL
CCCCCEEEEEHHHHHHHHHHHHHCCCEEEEECCCHHCCCCCCCCCCEEEEEECCCCCCCE
TAIAHESWSGDLPDGSPENAAAQTQLLYAGANRLITTRLAVLDLPEGNAMRAPGEAPGLM
EEEEECCCCCCCCCCCCCCCHHHHEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCEE
ALEIAMDGMAEKLDMDPVKFRIVNDTQVDPENPQRPFSQRQLVKCLEDGAKRFEWSKRKA
EEEEHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
RPGSTRDGRWLVGMGVAAAFRNAPVTTSGARMRLEQGGRVVVETDMTDIGTGSYTIIAQT
CCCCCCCCCEEEECCHHHHHCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCEEEEEHH
AAEMLGVPLNWVDVRLGDSSFPASAGSGGQWGANSSTAGVYAAAVKLREAVARQLGLDPA
HHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHH
AAEFADGYVRAGGKRIALGDAAASGALVVEDKIEFGDLSKTHQLSTFGAHFVEVGVDVAT
HHHHHCHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHH
AEVRIRRMLAVCAAGRILNPKSARSQVIGGMTMGAGAALMEELAVDKRLGFFVNHDLAGY
HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCE
EVPVHADIPHQDVVFLEESDPLSSPMKAKGVGELGICGVAAAIANAVYNATGVRVRDYPV
EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCC
TLDKLLPHLPEMLRA
CHHHHHHHHHHHHCC
>Mature Secondary Structure
MKFDTPAGTNPIDQLTVVGKPVDRIDGPLKTTGQAPYAYEHHDLPGQPAYGHVVGAGIAK
CCCCCCCCCCCHHHEEEECCCHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCC
GTIRSIDLSAARKAPGVLGIVTAQNAGKLQKGKFNTAKLLGGPEIAHYHQAIAVVVAETF
CCEEEEEHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHH
EQARAAGQLIKVDYGRHVGAYDLEKARGGAKVTKKGDAPNSNVGNFDAAFATAPVQLDAQ
HHHHHCCCEEEEECCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCCCHHHEECCEEEEEE
YTTPDHSHAMMEPHASIAMWDGDKLSVWTSNQMINWGAGDLARTLGLPRENVRIMSPYVG
ECCCCCCCCEECCCCEEEEECCCEEEEEECCCEEECCCHHHHHHHCCCCCCCEEECCCCC
GGFGGKLFLRADVVLASLAARQVGRPVKVMLPRPLIANNTTHRPATVQRIRLGAGRDGKL
CCCCCEEEEEHHHHHHHHHHHHHCCCEEEEECCCHHCCCCCCCCCCEEEEEECCCCCCCE
TAIAHESWSGDLPDGSPENAAAQTQLLYAGANRLITTRLAVLDLPEGNAMRAPGEAPGLM
EEEEECCCCCCCCCCCCCCCHHHHEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCEE
ALEIAMDGMAEKLDMDPVKFRIVNDTQVDPENPQRPFSQRQLVKCLEDGAKRFEWSKRKA
EEEEHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
RPGSTRDGRWLVGMGVAAAFRNAPVTTSGARMRLEQGGRVVVETDMTDIGTGSYTIIAQT
CCCCCCCCCEEEECCHHHHHCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCEEEEEHH
AAEMLGVPLNWVDVRLGDSSFPASAGSGGQWGANSSTAGVYAAAVKLREAVARQLGLDPA
HHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHH
AAEFADGYVRAGGKRIALGDAAASGALVVEDKIEFGDLSKTHQLSTFGAHFVEVGVDVAT
HHHHHCHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHH
AEVRIRRMLAVCAAGRILNPKSARSQVIGGMTMGAGAALMEELAVDKRLGFFVNHDLAGY
HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCE
EVPVHADIPHQDVVFLEESDPLSSPMKAKGVGELGICGVAAAIANAVYNATGVRVRDYPV
EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCC
TLDKLLPHLPEMLRA
CHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]