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The map label for this gene is yagS [H]

Identifier: 78048601

GI number: 78048601

Start: 3468228

End: 3469178

Strand: Reverse

Name: yagS [H]

Synonym: XCV3045

Alternate gene names: 78048601

Gene position: 3469178-3468228 (Counterclockwise)

Preceding gene: 78048602

Following gene: 78048600

Centisome position: 66.99

GC content: 66.56

Gene sequence:

>951_bases
ATGAAGGCCTTTAGCTACGAGCGGGCCACCTCGCCAGCCGATGCGGCAGCCAAGGCCGCGCGCCAGCCCGGTGCCAAGTT
CATTGCAGGCGGGACCAACCTGCTCGATCTGATGAAGCTGCAGATCGAAACGCCGTCGCACCTGATCGATGTCAACGGCC
TGAGCCTGGATACCATCGAGGCCACCCCTGAGGGCGGCCTGCGCATCGGCGCACTGGTGCGCAACACCGATCTGGCGGCC
GACCAGCGCGTGCGCCGCGATTATGCCGTGCTGTCGCGCGCATTGCTGGCCGGTGCCTCGGGACAACTGCGCAATCGCGC
CACCACGGCAGGCAACCTGCTGCAACGGACGCGGTGTCCCTATTTCTACGACACCAATCAGCCGTGCAACAAGCGACTGC
CTGGCAGTGGCTGCGCGGCCATCGGTGGCTACAACCGTCAACTGGCAGTCATCGGTGCCAGCGAGGCGTGCATTGCCACC
CATCCCAGCGATATGGCCATTGCCATGCGCCTGCTCGATGCCGTGGTGGAAACGGTGCGCCCGGATGGGCAGACGCGCGC
CATGGCCCTGTCCGAGTTCTATCGCGCACCGGGAACGACGCCGCACCTGGAAACCGTGCTGGAGCGCGGCGAATTGATCA
CCGCCGTCACCTTGCCCAAGCTGCTGGGTGGCACGCACGTGTACCGCAAGGTGCGCGACCGTGCCTCGTATGCGTTCGCC
CTGGTGTCGGTGGCCGCCGTCGTCCAGCGCGATGGCAGTACACGCGTCGCAGTCGGCGGCGTCGCGCACAAGCCATGGCG
CAGCGAAGCTGCCGAAGCCAGAGCGAAAGAGGGTGCCCGCGCCATTGCGTCCGTGTTGCTCGACGGCGCACAGCCCACCG
AACACAACGCATTCAAGGTGCCGCTGGTCGAGCGCACCTTGACCGCGATCCTGGCCGACACGAGGGCCTGA

Upstream 100 bases:

>100_bases
CCACACCCGAATTGCAGGAGCGCATGAGCGGCAATATTTGCCGCTGCGGTGCGTATTCCAACATCGTTGAAGCCATCAAC
GACGTTGCCGGAGGCCGCGC

Downstream 100 bases:

>100_bases
TATGAAATTCGACACTCCCGCCGGCACCAATCCCATCGATCAGCTCACTGTCGTCGGCAAGCCCGTCGACCGTATCGACG
GGCCACTCAAGACCACCGGG

Product: putative xanthine dehydrogenase FAD binding subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MKAFSYERATSPADAAAKAARQPGAKFIAGGTNLLDLMKLQIETPSHLIDVNGLSLDTIEATPEGGLRIGALVRNTDLAA
DQRVRRDYAVLSRALLAGASGQLRNRATTAGNLLQRTRCPYFYDTNQPCNKRLPGSGCAAIGGYNRQLAVIGASEACIAT
HPSDMAIAMRLLDAVVETVRPDGQTRAMALSEFYRAPGTTPHLETVLERGELITAVTLPKLLGGTHVYRKVRDRASYAFA
LVSVAAVVQRDGSTRVAVGGVAHKPWRSEAAEARAKEGARAIASVLLDGAQPTEHNAFKVPLVERTLTAILADTRA

Sequences:

>Translated_316_residues
MKAFSYERATSPADAAAKAARQPGAKFIAGGTNLLDLMKLQIETPSHLIDVNGLSLDTIEATPEGGLRIGALVRNTDLAA
DQRVRRDYAVLSRALLAGASGQLRNRATTAGNLLQRTRCPYFYDTNQPCNKRLPGSGCAAIGGYNRQLAVIGASEACIAT
HPSDMAIAMRLLDAVVETVRPDGQTRAMALSEFYRAPGTTPHLETVLERGELITAVTLPKLLGGTHVYRKVRDRASYAFA
LVSVAAVVQRDGSTRVAVGGVAHKPWRSEAAEARAKEGARAIASVLLDGAQPTEHNAFKVPLVERTLTAILADTRA
>Mature_316_residues
MKAFSYERATSPADAAAKAARQPGAKFIAGGTNLLDLMKLQIETPSHLIDVNGLSLDTIEATPEGGLRIGALVRNTDLAA
DQRVRRDYAVLSRALLAGASGQLRNRATTAGNLLQRTRCPYFYDTNQPCNKRLPGSGCAAIGGYNRQLAVIGASEACIAT
HPSDMAIAMRLLDAVVETVRPDGQTRAMALSEFYRAPGTTPHLETVLERGELITAVTLPKLLGGTHVYRKVRDRASYAFA
LVSVAAVVQRDGSTRVAVGGVAHKPWRSEAAEARAKEGARAIASVLLDGAQPTEHNAFKVPLVERTLTAILADTRA

Specific function: Unknown

COG id: COG1319

COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Escherichia coli, GI1786479, Length=316, Percent_Identity=74.6835443037975, Blast_Score=491, Evalue=1e-140,
Organism=Escherichia coli, GI1789231, Length=282, Percent_Identity=27.3049645390071, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005107
- InterPro:   IPR016169
- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR002346 [H]

Pfam domain/function: PF03450 CO_deh_flav_C; PF00941 FAD_binding_5 [H]

EC number: =1.17.1.4 [H]

Molecular weight: Translated: 33652; Mature: 33652

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAFSYERATSPADAAAKAARQPGAKFIAGGTNLLDLMKLQIETPSHLIDVNGLSLDTIE
CCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCCCEEECCCCEEEEEE
ATPEGGLRIGALVRNTDLAADQRVRRDYAVLSRALLAGASGQLRNRATTAGNLLQRTRCP
CCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
YFYDTNQPCNKRLPGSGCAAIGGYNRQLAVIGASEACIATHPSDMAIAMRLLDAVVETVR
CEECCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHC
PDGQTRAMALSEFYRAPGTTPHLETVLERGELITAVTLPKLLGGTHVYRKVRDRASYAFA
CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHH
LVSVAAVVQRDGSTRVAVGGVAHKPWRSEAAEARAKEGARAIASVLLDGAQPTEHNAFKV
HHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEC
PLVERTLTAILADTRA
HHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKAFSYERATSPADAAAKAARQPGAKFIAGGTNLLDLMKLQIETPSHLIDVNGLSLDTIE
CCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCCCEEECCCCEEEEEE
ATPEGGLRIGALVRNTDLAADQRVRRDYAVLSRALLAGASGQLRNRATTAGNLLQRTRCP
CCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
YFYDTNQPCNKRLPGSGCAAIGGYNRQLAVIGASEACIATHPSDMAIAMRLLDAVVETVR
CEECCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHC
PDGQTRAMALSEFYRAPGTTPHLETVLERGELITAVTLPKLLGGTHVYRKVRDRASYAFA
CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHH
LVSVAAVVQRDGSTRVAVGGVAHKPWRSEAAEARAKEGARAIASVLLDGAQPTEHNAFKV
HHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEC
PLVERTLTAILADTRA
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]