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The map label for this gene is rrrA [C]

Identifier: 78048524

GI number: 78048524

Start: 3375247

End: 3375747

Strand: Reverse

Name: rrrA [C]

Synonym: XCV2968

Alternate gene names: 78048524

Gene position: 3375747-3375247 (Counterclockwise)

Preceding gene: 78048527

Following gene: 78048523

Centisome position: 65.19

GC content: 69.06

Gene sequence:

>501_bases
ATGACCTGGACCACGCCTGATCTGTGTGACCGCTACCCCGACGTGACGATCGCCGAACCGCTGTTCCGCCACTTCGGCGG
GCGCACGGCATTCGCCGGACCGATGGTCACGGTGCGCTGTTTCGAAGACAACTCGCGGGTGCGCGAGCTGTCCGCCATGC
CGGGCGACGGCCGCGTGCTGGTGGTGGACGGGCAGGGCTCGCTCAAGCATGCGCTGCTGGGCGACCAGATCGCGGCCAAT
GCGGTGGCGAACGGCTGGGCCGGCGTGCTGATCCACGGCTGCGTGCGCGATGTCGAGATTCTTGCCACGTTGCCGCTGGG
GGTGCTGGCGCTGGCGGCTTGCCCGCGCCGCACCGAGCGACGCGATCTGGGCGATGTGGATGTGGCGGTGAATTTTGCCG
GCGTGCCCTTCGTTCCGGGCCACTGGCTGTACGCCGATGCCAATGGCGTGCTGGTGGCGCCGCAACCGTTGGCGCTGGAT
GGCGCCGGCGGATCGATCTGA

Upstream 100 bases:

>100_bases
AATCGGGTGTCGGTCATCGGGTATCGGGCATCCGTCACCCATCGCCCGCGCGCGGCCACAGCCGGCTACCATGCCAACTC
TGCCGCGCGAGATCGCCCCT

Downstream 100 bases:

>100_bases
CCAACAACCTGAAGGTGATGCAGTGACCTTGAACCGATGGCTGAGTGGGGGCGTGCTGATGGTGGCAAGCTTGGTGACGA
CAACGCACGCGGCCGAACTT

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MTWTTPDLCDRYPDVTIAEPLFRHFGGRTAFAGPMVTVRCFEDNSRVRELSAMPGDGRVLVVDGQGSLKHALLGDQIAAN
AVANGWAGVLIHGCVRDVEILATLPLGVLALAACPRRTERRDLGDVDVAVNFAGVPFVPGHWLYADANGVLVAPQPLALD
GAGGSI

Sequences:

>Translated_166_residues
MTWTTPDLCDRYPDVTIAEPLFRHFGGRTAFAGPMVTVRCFEDNSRVRELSAMPGDGRVLVVDGQGSLKHALLGDQIAAN
AVANGWAGVLIHGCVRDVEILATLPLGVLALAACPRRTERRDLGDVDVAVNFAGVPFVPGHWLYADANGVLVAPQPLALD
GAGGSI
>Mature_165_residues
TWTTPDLCDRYPDVTIAEPLFRHFGGRTAFAGPMVTVRCFEDNSRVRELSAMPGDGRVLVVDGQGSLKHALLGDQIAANA
VANGWAGVLIHGCVRDVEILATLPLGVLALAACPRRTERRDLGDVDVAVNFAGVPFVPGHWLYADANGVLVAPQPLALDG
AGGSI

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=161, Percent_Identity=45.9627329192547, Blast_Score=149, Evalue=7e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 17528; Mature: 17397

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWTTPDLCDRYPDVTIAEPLFRHFGGRTAFAGPMVTVRCFEDNSRVRELSAMPGDGRVL
CCCCCHHHHHCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHCCCCCCEEE
VVDGQGSLKHALLGDQIAANAVANGWAGVLIHGCVRDVEILATLPLGVLALAACPRRTER
EEECCCCCCHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
RDLGDVDVAVNFAGVPFVPGHWLYADANGVLVAPQPLALDGAGGSI
CCCCCEEEEEEECCCCCCCCCEEEECCCCEEECCCCEEECCCCCCC
>Mature Secondary Structure 
TWTTPDLCDRYPDVTIAEPLFRHFGGRTAFAGPMVTVRCFEDNSRVRELSAMPGDGRVL
CCCCHHHHHCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHCCCCCCEEE
VVDGQGSLKHALLGDQIAANAVANGWAGVLIHGCVRDVEILATLPLGVLALAACPRRTER
EEECCCCCCHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
RDLGDVDVAVNFAGVPFVPGHWLYADANGVLVAPQPLALDGAGGSI
CCCCCEEEEEEECCCCCCCCCEEEECCCCEEECCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12024217 [H]