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The map label for this gene is ydaM [H]

Identifier: 78048527

GI number: 78048527

Start: 3378611

End: 3379738

Strand: Reverse

Name: ydaM [H]

Synonym: XCV2971

Alternate gene names: 78048527

Gene position: 3379738-3378611 (Counterclockwise)

Preceding gene: 78048528

Following gene: 78048524

Centisome position: 65.27

GC content: 65.69

Gene sequence:

>1128_bases
ATGGTGGCACTTGCCGGGCTCCGGCATACTTTCACAGATAACAGCCAGGGGGCGGCAGTGATCAAACCGGAATTGCCGAG
CAACGAGGCCGAGCGGCTGGCCGCGCTGCGCCAGTACGACGTGCTGGATACGCCAGCCGAACGTGCATTCGACGACCTGA
CCATGATTGCCTCCACGCTGTGCGAGACGCAGATGGCGGCGGTGGTGCTGGTGGACGAAGACCGGCAGTGGTTCAAGTCT
GCGCACGGTGCGCCACGCAGCGAAGCACCACGCGATATCTCGTTCTGCGCGCACGCGATCCTGCGCCCGGACGAAGTGCT
GATGGTGGACGACACCTTGCTGGACCCACGCTTCCACGATAACCCGATGGTGGTCGGTAGCGGCGGGGTGCGCTTCTATG
CCGGCGCGCCGCTGGTGACCAGCCAGGGCCTGGCGCTGGGCTCGCTGTGCGTGTTCGACCAGACCCCGGCGCATCTGCGC
GAAGACCAGCGCGAGGCCTTGCAGGCATTGTCGCGGCAGGCCTCGCAGCTGCTTGAGTTGCGGCTGGCCGGCAGGCAGTT
GCGCCAGCAGTTGCACGAGCGCGAGTGGTACGAACAGCAGATGGCTGGCTATTACGCGCAGATGGATGCGTTGAACGCTG
ACCTGGTCGAACAGACCCGCACCGATCCGTTGACCGGCCTGCCCAACCGGCGCGCGTTCGCGGTGGCGTTGGCGGCGGCC
ACCGAACAGACGCGTGCGGTGGGCCAGCCGCTGTCGGTCGCGCTGCTGGACGTGGACCACTTCAAGACCGTCAACGACGT
GCATGGGCACGATCAGGGCGATGCAGTGCTGCGCGAATTGTCCGCATTGTTGCGTGCGCATATGGCCGGTGCCGGCACCA
TCGCCCGGTATGGCGGCGAAGAATTCGTATTGCTGCTCCCCAATACGGATCTGCTGCAGGCACGCGTGCAATGCGAATAC
CTGCGCCAGAGCGTGGCGGCGATGACGATCGCGCTGCCGGTGACGGTGAGTATCGGTGTGGCGACCTTGTACCCGCAGGA
AAGCGTGGAGGCAGTGATCAAGCGCGCCGACCAGGCCCTGTATGCGGCCAAGCGCGGTGGGCGCGATCAGGTGGTCGCAC
TGGAGTAG

Upstream 100 bases:

>100_bases
AATGTGCAACGTCGTGCCGGGTGCTTGCGCCCGCTGTATGGATCACGCTTCGAAATATCCGATGCCGTCCAGGGCGGCGC
TGCAGCGTAGGGTGCGCCCG

Downstream 100 bases:

>100_bases
GGGCGCGTGGTTGCGCGCCTGCCGATGCAGATCGCCTGGCCAGCGCATGGGACGTCGATTGCCGTATGCCGGGCGGCGCG
GACGCCGCGCGATGCAGCGT

Product: putative sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MVALAGLRHTFTDNSQGAAVIKPELPSNEAERLAALRQYDVLDTPAERAFDDLTMIASTLCETQMAAVVLVDEDRQWFKS
AHGAPRSEAPRDISFCAHAILRPDEVLMVDDTLLDPRFHDNPMVVGSGGVRFYAGAPLVTSQGLALGSLCVFDQTPAHLR
EDQREALQALSRQASQLLELRLAGRQLRQQLHEREWYEQQMAGYYAQMDALNADLVEQTRTDPLTGLPNRRAFAVALAAA
TEQTRAVGQPLSVALLDVDHFKTVNDVHGHDQGDAVLRELSALLRAHMAGAGTIARYGGEEFVLLLPNTDLLQARVQCEY
LRQSVAAMTIALPVTVSIGVATLYPQESVEAVIKRADQALYAAKRGGRDQVVALE

Sequences:

>Translated_375_residues
MVALAGLRHTFTDNSQGAAVIKPELPSNEAERLAALRQYDVLDTPAERAFDDLTMIASTLCETQMAAVVLVDEDRQWFKS
AHGAPRSEAPRDISFCAHAILRPDEVLMVDDTLLDPRFHDNPMVVGSGGVRFYAGAPLVTSQGLALGSLCVFDQTPAHLR
EDQREALQALSRQASQLLELRLAGRQLRQQLHEREWYEQQMAGYYAQMDALNADLVEQTRTDPLTGLPNRRAFAVALAAA
TEQTRAVGQPLSVALLDVDHFKTVNDVHGHDQGDAVLRELSALLRAHMAGAGTIARYGGEEFVLLLPNTDLLQARVQCEY
LRQSVAAMTIALPVTVSIGVATLYPQESVEAVIKRADQALYAAKRGGRDQVVALE
>Mature_375_residues
MVALAGLRHTFTDNSQGAAVIKPELPSNEAERLAALRQYDVLDTPAERAFDDLTMIASTLCETQMAAVVLVDEDRQWFKS
AHGAPRSEAPRDISFCAHAILRPDEVLMVDDTLLDPRFHDNPMVVGSGGVRFYAGAPLVTSQGLALGSLCVFDQTPAHLR
EDQREALQALSRQASQLLELRLAGRQLRQQLHEREWYEQQMAGYYAQMDALNADLVEQTRTDPLTGLPNRRAFAVALAAA
TEQTRAVGQPLSVALLDVDHFKTVNDVHGHDQGDAVLRELSALLRAHMAGAGTIARYGGEEFVLLLPNTDLLQARVQCEY
LRQSVAAMTIALPVTVSIGVATLYPQESVEAVIKRADQALYAAKRGGRDQVVALE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=43.0232558139535, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787816, Length=242, Percent_Identity=28.9256198347107, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI145693134, Length=156, Percent_Identity=33.974358974359, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787262, Length=160, Percent_Identity=35, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786584, Length=162, Percent_Identity=35.8024691358025, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87081977, Length=284, Percent_Identity=25.7042253521127, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787541, Length=161, Percent_Identity=35.4037267080745, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1788381, Length=161, Percent_Identity=35.4037267080745, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87082007, Length=179, Percent_Identity=31.2849162011173, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787802, Length=176, Percent_Identity=30.6818181818182, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788956, Length=187, Percent_Identity=32.620320855615, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787056, Length=151, Percent_Identity=32.4503311258278, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788085, Length=159, Percent_Identity=28.9308176100629, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 41031; Mature: 41031

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVALAGLRHTFTDNSQGAAVIKPELPSNEAERLAALRQYDVLDTPAERAFDDLTMIASTL
CEEECCCCHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
CETQMAAVVLVDEDRQWFKSAHGAPRSEAPRDISFCAHAILRPDEVLMVDDTLLDPRFHD
HHHHHEEEEEEECCHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCC
NPMVVGSGGVRFYAGAPLVTSQGLALGSLCVFDQTPAHLREDQREALQALSRQASQLLEL
CCEEECCCCEEEEECCCCEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
RLAGRQLRQQLHEREWYEQQMAGYYAQMDALNADLVEQTRTDPLTGLPNRRAFAVALAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHH
TEQTRAVGQPLSVALLDVDHFKTVNDVHGHDQGDAVLRELSALLRAHMAGAGTIARYGGE
HHHHHHCCCCCEEEEEEHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCC
EFVLLLPNTDLLQARVQCEYLRQSVAAMTIALPVTVSIGVATLYPQESVEAVIKRADQAL
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECEEEECCHHHHHHHHHHHHHHH
YAAKRGGRDQVVALE
HHHHCCCCCCEEEEC
>Mature Secondary Structure
MVALAGLRHTFTDNSQGAAVIKPELPSNEAERLAALRQYDVLDTPAERAFDDLTMIASTL
CEEECCCCHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
CETQMAAVVLVDEDRQWFKSAHGAPRSEAPRDISFCAHAILRPDEVLMVDDTLLDPRFHD
HHHHHEEEEEEECCHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCC
NPMVVGSGGVRFYAGAPLVTSQGLALGSLCVFDQTPAHLREDQREALQALSRQASQLLEL
CCEEECCCCEEEEECCCCEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
RLAGRQLRQQLHEREWYEQQMAGYYAQMDALNADLVEQTRTDPLTGLPNRRAFAVALAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHH
TEQTRAVGQPLSVALLDVDHFKTVNDVHGHDQGDAVLRELSALLRAHMAGAGTIARYGGE
HHHHHHCCCCCEEEEEEHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCC
EFVLLLPNTDLLQARVQCEYLRQSVAAMTIALPVTVSIGVATLYPQESVEAVIKRADQAL
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECEEEECCHHHHHHHHHHHHHHH
YAAKRGGRDQVVALE
HHHHCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]