Click here to switch to the map view.

The map label for this gene is 78048457

Identifier: 78048457

GI number: 78048457

Start: 3303462

End: 3304157

Strand: Reverse

Name: 78048457

Synonym: XCV2901

Alternate gene names: NA

Gene position: 3304157-3303462 (Counterclockwise)

Preceding gene: 78048458

Following gene: 78048453

Centisome position: 63.81

GC content: 63.65

Gene sequence:

>696_bases
ATGCCTCAATTGCCGCCCGTCACCAAAGCATTACTGATCGCCAACATCGGCTTGTTCCTGCTGCTATGGGCGGTGGGCGA
CCTGGGCGCTGGCGTGTTGCCATCGGACAGCGTGTTGTCGTGGCTGATGTTGTGGCCGCTGTCCAACGGCTTCGATGCGT
TTTCGCCGGGTGCCAGCTTCATGCCCTGGCAGCTGCTGACCTACGCATTCCTGCATGGCGGCTTCAACCATCTATTTTTC
AACATGCTGGCGCTCTTCATGTTCGGCGCGCCGTTGGAACAGACCTGGGGCCAGAAGCGCTTTCTCACCTACTACCTCGT
GTGCGTCGCCGGCGCCGGCCTGTGCCAGTTGCTGATGGCCTGGTTCACGCAAAGCGGTGCGCCGGTCGTCGGCGCATCGG
GCGGCGTGTTCGGTTTGCTGCTGGCTTACGGAATGCTGTTCCCCAATCAGCGCGTGATGCTGCTGTTCCCGCCGATTCCA
ATGAAGGCGCGGACCTTCGTGATCGTGTTCGGCGCGATCGAGTTACTGCTCGGGGCGACCGGTTGGCAGCCTGGCGTGGC
CCACTTCGCGCATCTGGGCGGCATGCTGTTCGGCTGGCTGATGATCCGCTACTGGCGCGGCCAGTCGCCATTCGGCGGCA
GCGGCGGAAGGAAGGGCGGCGGGAAGCGCAAGCCGCCGTTGCGCGTGGTGCGTTGA

Upstream 100 bases:

>100_bases
CGTGTGCGCCGGGCCAGCGCCGCGCAGCGGCTGGATGCGGCCGTGTGGGGACCTTCATAAGCCTGCCGTTATCATCGGCA
GCATTACGAAGGAAGCCGCC

Downstream 100 bases:

>100_bases
GATCCACGCTGCTCCGTAGGAGCGACCCTGGCCGCGATGGGGTTTTACCGGCAAGGCTTCATCTCGGCCGGGCCGCCCCT
ACGAAGAGCGCGTTGAGGTA

Product: rhomboid family membrane protein

Products: NA

Alternate protein names: Transmembrane Rhomboid Family Protein; Peptidase; Integral Membrane Protein; Cytoplasmic Membrane Protein; Rhomboid-Like Protein; Serine Protease; Rhomboid Family Membrane Protein

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MPQLPPVTKALLIANIGLFLLLWAVGDLGAGVLPSDSVLSWLMLWPLSNGFDAFSPGASFMPWQLLTYAFLHGGFNHLFF
NMLALFMFGAPLEQTWGQKRFLTYYLVCVAGAGLCQLLMAWFTQSGAPVVGASGGVFGLLLAYGMLFPNQRVMLLFPPIP
MKARTFVIVFGAIELLLGATGWQPGVAHFAHLGGMLFGWLMIRYWRGQSPFGGSGGRKGGGKRKPPLRVVR

Sequences:

>Translated_231_residues
MPQLPPVTKALLIANIGLFLLLWAVGDLGAGVLPSDSVLSWLMLWPLSNGFDAFSPGASFMPWQLLTYAFLHGGFNHLFF
NMLALFMFGAPLEQTWGQKRFLTYYLVCVAGAGLCQLLMAWFTQSGAPVVGASGGVFGLLLAYGMLFPNQRVMLLFPPIP
MKARTFVIVFGAIELLLGATGWQPGVAHFAHLGGMLFGWLMIRYWRGQSPFGGSGGRKGGGKRKPPLRVVR
>Mature_230_residues
PQLPPVTKALLIANIGLFLLLWAVGDLGAGVLPSDSVLSWLMLWPLSNGFDAFSPGASFMPWQLLTYAFLHGGFNHLFFN
MLALFMFGAPLEQTWGQKRFLTYYLVCVAGAGLCQLLMAWFTQSGAPVVGASGGVFGLLLAYGMLFPNQRVMLLFPPIPM
KARTFVIVFGAIELLLGATGWQPGVAHFAHLGGMLFGWLMIRYWRGQSPFGGSGGRKGGGKRKPPLRVVR

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25153; Mature: 25022

Theoretical pI: Translated: 10.74; Mature: 10.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQLPPVTKALLIANIGLFLLLWAVGDLGAGVLPSDSVLSWLMLWPLSNGFDAFSPGASF
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
MPWQLLTYAFLHGGFNHLFFNMLALFMFGAPLEQTWGQKRFLTYYLVCVAGAGLCQLLMA
CHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
WFTQSGAPVVGASGGVFGLLLAYGMLFPNQRVMLLFPPIPMKARTFVIVFGAIELLLGAT
HHHCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCC
GWQPGVAHFAHLGGMLFGWLMIRYWRGQSPFGGSGGRKGGGKRKPPLRVVR
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PQLPPVTKALLIANIGLFLLLWAVGDLGAGVLPSDSVLSWLMLWPLSNGFDAFSPGASF
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
MPWQLLTYAFLHGGFNHLFFNMLALFMFGAPLEQTWGQKRFLTYYLVCVAGAGLCQLLMA
CHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
WFTQSGAPVVGASGGVFGLLLAYGMLFPNQRVMLLFPPIPMKARTFVIVFGAIELLLGAT
HHHCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCC
GWQPGVAHFAHLGGMLFGWLMIRYWRGQSPFGGSGGRKGGGKRKPPLRVVR
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA